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BaseInfo

ncRNA ID novel_gma_miR3241
Species Glycine max
Class miRNA
Genome position Chr8:46058489-46058530 [-]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 20
Mature sequence(if miRNA) 23 - UUUUGGUUAUUAUUAUUAUU - 42
Stem-loop(if miRNA) -U    GU       -    U
  UUUG  UAUUAUU AUUA U
  ||||  ||||||| ||||
  AAAU  AUAAUAA UAAU A
UU    AU       A    U
Stem-loop sequence UUUUGGUUAUUAUUAUUAUUAUUAAUAAAUAAUAUAUAAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006576319.2
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  |*||||||||||||||||||
targets:793   AUUAAUAAUAAUAACCAAAA   812

1.0 PREDICTED: Glycine max transcription factor TCP9-like (LOC100814309), mRNA transcription factor TCP9-like(LOC100814309) coding protein psRNATarget
XM_003529923.3
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  **||||||||||||||||||
targets:953   UCUAAUAAUAAUAACCAAAA   972

1.0 PREDICTED: Glycine max transcription factor TCP9-like (LOC100804760), mRNA transcription factor TCP9-like(LOC100804760) coding protein psRNATarget
XM_003539121.3
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  *|||*|||||||||||||||
targets:55   UAUAUUAAUAAUAACCAAAA   74

1.0 PREDICTED: Glycine max glycine cleavage system H protein, mitochondrial (LOC100785811), mRNA glycine cleavage system H protein, mitochondrial(LOC100785811) coding protein psRNATarget
XM_003531599.3
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  ||||||||||||||=|||||
targets:372   AAUAAUAAUAAUAAUCAAAA   391

1.5 PREDICTED: Glycine max protein PAF1 homolog (LOC100797526), mRNA protein PAF1 homolog(LOC100797526) coding protein psRNATarget
XM_003539041.3
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  *|||||||||||||=|||||
targets:174   CAUAAUAAUAAUAAUCAAAA   193

1.5 PREDICTED: Glycine max WUSCHEL-related homeobox 2 (LOC100801698), mRNA WUSCHEL-related homeobox 2(LOC100801698) coding protein psRNATarget
NM_001317424.1
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  |||||||||||||||*||||
targets:583   AAUAAUAAUAAUAACAAAAA   602

1.5 Glycine max uncharacterized LOC100791820 (LOC100791820), mRNA uncharacterized LOC100791820(LOC100791820) coding protein psRNATarget
BT095412.1
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  |||||||||||||||*||||
targets:585   AAUAAUAAUAAUAACAAAAA   604

1.5 Soybean clone JCVI-FLGm-19G18 unknown mRNA NA coding protein psRNATarget
NM_001249013.2
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  ||||*||||||||||||||=
targets:315   AAUACUAAUAAUAACCAAAG   334

2.0 Glycine max uncharacterized LOC100527172 (LOC100527172), mRNA uncharacterized LOC100527172(LOC100527172) coding protein psRNATarget
XM_006579639.2
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  ||||||||||||||=||||=
targets:924   AAUAAUAAUAAUAAUCAAAG   943

2.5 PREDICTED: Glycine max transcription factor BIM1-like (LOC100800999), transcript variant X2, mRNA transcription factor BIM1-like(LOC100800999) coding protein psRNATarget
XM_003524448.3
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  ||||||||||||||=||||=
targets:924   AAUAAUAAUAAUAAUCAAAG   943

2.5 PREDICTED: Glycine max transcription factor BIM1-like (LOC100800999), transcript variant X1, mRNA transcription factor BIM1-like(LOC100800999) coding protein psRNATarget
AK245805.1
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  ||||||||||||||=||||=
targets:963   AAUAAUAAUAAUAAUCAAAG   982

2.5 Glycine max cDNA, clone: GMFL01-41-N16 NA coding protein psRNATarget
XM_003549535.3
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  ||||||||||||||=||||=
targets:1016   AAUAAUAAUAAUAAUCAAAG   1035

2.5 PREDICTED: Glycine max transcription factor BIM1 (LOC100808016), transcript variant X2, mRNA transcription factor BIM1(LOC100808016) coding protein psRNATarget
XM_014770039.1
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  ||||||||||||||=||||=
targets:1047   AAUAAUAAUAAUAAUCAAAG   1066

2.5 PREDICTED: Glycine max transcription factor BIM1 (LOC100808016), transcript variant X1, mRNA transcription factor BIM1(LOC100808016) coding protein psRNATarget
XM_003555196.3
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  ||||||||||||||||||**
targets:506   AAUAAUAAUAAUAACCAAUU   525

2.5 PREDICTED: Glycine max spermidine hydroxycinnamoyl transferase-like (LOC100787038), transcript variant X2, mRNA spermidine hydroxycinnamoyl transferase-like(LOC100787038) coding protein psRNATarget
XM_006605547.2
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  ||||||||||||||||||**
targets:506   AAUAAUAAUAAUAACCAAUU   525

2.5 PREDICTED: Glycine max spermidine hydroxycinnamoyl transferase-like (LOC100787038), transcript variant X1, mRNA spermidine hydroxycinnamoyl transferase-like(LOC100787038) coding protein psRNATarget
XM_014775764.1
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  ||||||||||||||||||**
targets:534   AAUAAUAAUAAUAACCAAUU   553

2.5 PREDICTED: Glycine max chloroplast sensor kinase, chloroplastic-like (LOC106798744), transcript variant X1, mRNA chloroplast sensor kinase, chloroplastic-like(LOC106798744) coding protein psRNATarget
XM_014775765.1
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  ||||||||||||||||||**
targets:537   AAUAAUAAUAAUAACCAAUU   556

2.5 PREDICTED: Glycine max chloroplast sensor kinase, chloroplastic-like (LOC106798744), transcript variant X2, mRNA chloroplast sensor kinase, chloroplastic-like(LOC106798744) coding protein psRNATarget
XM_003522714.2
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  *|||||||||||||=||||*
targets:845   CAUAAUAAUAAUAAUCAAAU   864

2.5 PREDICTED: Glycine max pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic-like (LOC100795497), mRNA pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic-like(LOC100795497) coding protein psRNATarget
XM_003518128.2
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  ||||||||*||||||||||*
targets:808   AAUAAUAACAAUAACCAAAU   827

2.5 PREDICTED: Glycine max dof zinc finger protein DOF3.5-like (LOC100794208), mRNA dof zinc finger protein DOF3.5-like(LOC100794208) coding protein psRNATarget
XM_006589817.2
ncRNA:20   UUAUUAUUAUUAUUGGUUUU   1
  |||||||||*|||||||||*
targets:769   AAUAAUAAUCAUAACCAAAU   788

2.5 PREDICTED: Glycine max dof zinc finger protein DOF3.5-like (LOC100787193), mRNA dof zinc finger protein DOF3.5-like(LOC100787193) coding protein psRNATarget
XM_003520701.3
ncRNA:20   UUAUUAUUAUUAUUGGU-UUU   1
  |||||||||||||||||-|||
targets:100   AAUAAUAAUAAUAACCACAAA   120

3.0 PREDICTED: Glycine max probable beta-D-xylosidase 2 (LOC100789316), mRNA probable beta-D-xylosidase 2(LOC100789316) coding protein psRNATarget
XM_006578469.2
ncRNA:20   UUAUUAUUAUUAUU-GGUUUU   1
  ||||||||||||||-||||||
targets:169   AAUAAUAAUAAUAAACCAAAA   189

3.0 PREDICTED: Glycine max protein LONGIFOLIA 2-like (LOC100787391), transcript variant X5, mRNA protein LONGIFOLIA 2-like(LOC100787391) coding protein psRNATarget
XM_006578468.2
ncRNA:20   UUAUUAUUAUUAUU-GGUUUU   1
  ||||||||||||||-||||||
targets:169   AAUAAUAAUAAUAAACCAAAA   189

3.0 PREDICTED: Glycine max protein LONGIFOLIA 2-like (LOC100787391), transcript variant X3, mRNA protein LONGIFOLIA 2-like(LOC100787391) coding protein psRNATarget
XM_006578467.2
ncRNA:20   UUAUUAUUAUUAUU-GGUUUU   1
  ||||||||||||||-||||||
targets:169   AAUAAUAAUAAUAAACCAAAA   189

3.0 PREDICTED: Glycine max protein LONGIFOLIA 2-like (LOC100787391), transcript variant X2, mRNA protein LONGIFOLIA 2-like(LOC100787391) coding protein psRNATarget
XM_006578470.2
ncRNA:20   UUAUUAUUAUUAUU-GGUUUU   1
  ||||||||||||||-||||||
targets:168   AAUAAUAAUAAUAAACCAAAA   188

3.0 PREDICTED: Glycine max protein LONGIFOLIA 2-like (LOC100787391), transcript variant X6, mRNA protein LONGIFOLIA 2-like(LOC100787391) coding protein psRNATarget
XM_006578465.2
ncRNA:20   UUAUUAUUAUUAUU-GGUUUU   1
  ||||||||||||||-||||||
targets:169   AAUAAUAAUAAUAAACCAAAA   189

3.0 PREDICTED: Glycine max protein LONGIFOLIA 2-like (LOC100787391), transcript variant X1, mRNA protein LONGIFOLIA 2-like(LOC100787391) coding protein psRNATarget
XM_014774715.1
ncRNA:20   UUAUUAUUAUUAUU-GGUUUU   1
  ||||||||||||||-||||||
targets:169   AAUAAUAAUAAUAAACCAAAA   189

3.0 PREDICTED: Glycine max protein LONGIFOLIA 2-like (LOC100787391), transcript variant X4, mRNA protein LONGIFOLIA 2-like(LOC100787391) coding protein psRNATarget
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