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BaseInfo

ncRNA ID novel_gma_miR3237
Species Glycine max
Class miRNA
Genome position Chr7:10414643-10414744 [+]
Reference genome Glycine_max_v2.0
Source SRR1451670;SRR1451674;SRR1451676
Length 20
Mature sequence(if miRNA) 83 - UAAUGGAGAGCUCAUUUUAG - 102
Stem-loop(if miRNA) --     A    AA                   U  CC    AUCUUU   A
  AAAAU AGCU  CCAUUAGUUAAUUUGUAGA GU  UCUC      UAG G
  ||||| ||||  ||||||||||||||||||| ||  ||||      ||| A
  UUUUA UCGA  GGUAAUCGAUUAAACAUCU CG  AGAG      AUC A
GA     C    GA                   U  AC    ---GAU   C
Stem-loop sequence AAAAUAAGCUAACCAUUAGUUAAUUUGUAGAUGUCCUCUCAUCUUUUAGAGAACCUAUAGGAGACAGCUUCUACAAAUUAGCUAAUGGAGAGCUCAUUUUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006603606.2
ncRNA:20   GAUUUUACUCGAGAGGUAAU   1
  =||||||||*|||||||||*
targets:1454   UUAAAAUGACCUCUCCAUUU   1473

2.5 PREDICTED: Glycine max uncharacterized LOC100500460 (LOC100500460), transcript variant X1, mRNA uncharacterized LOC100500460(LOC100500460) coding protein psRNATarget
XM_006603608.2
ncRNA:20   GAUUUUACUCGAGAGGUAAU   1
  =||||||||*|||||||||*
targets:1464   UUAAAAUGACCUCUCCAUUU   1483

2.5 PREDICTED: Glycine max uncharacterized LOC100500460 (LOC100500460), transcript variant X3, mRNA uncharacterized LOC100500460(LOC100500460) coding protein psRNATarget