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BaseInfo

ncRNA ID novel_gma_miR3228
Species Glycine max
Class miRNA
Genome position Chr7:3095397-3095478 [+]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 20
Mature sequence(if miRNA) 63 - CCGCAAUUUAAAACCAUGAU - 82
Stem-loop(if miRNA) --                    -AU       UUAU  A  GU
  CAUGGUUUUAAAUUGCGGUC   GAUGUGA    GG GU  C
  ||||||||||||||||||||   |||||||    || ||
  GUACCAAAAUUUAACGCCAG   UUGCACU    CC UA  A
UA                    GCG       ---U  A  AU
Stem-loop sequence CAUGGUUUUAAAUUGCGGUCAUGAUGUGAUUAUGGAGUGUCAUAAUACCUUCACGUUGCGGACCGCAAUUUAAAACCAUGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006602929.2
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  ||||||||||||||||||||
targets:835   AUCAUGGUUUUAAAUUGCGG   854

0.0 PREDICTED: Glycine max protein YIF1B-like (LOC100801486), transcript variant X3, mRNA protein YIF1B-like(LOC100801486) coding protein psRNATarget
XM_003551713.3
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  |||||||||||||||||||*
targets:1621   AUCAUGGUUUUAAAUUGCGA   1640

1.0 PREDICTED: Glycine max phenolic glucoside malonyltransferase 1-like (LOC100804121), mRNA phenolic glucoside malonyltransferase 1-like(LOC100804121) coding protein psRNATarget
XM_014771892.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  =|||*|||||||||||||||
targets:288   GUCAAGGUUUUAAAUUGCGG   307

1.0 PREDICTED: Glycine max regulation of nuclear pre-mRNA domain-containing protein 1A-like (LOC100806108), transcript variant X4, mRNA regulation of nuclear pre-mRNA domain-containing protein 1A-like(LOC100806108) coding protein psRNATarget
XM_014771891.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  =|||*|||||||||||||||
targets:343   GUCAAGGUUUUAAAUUGCGG   362

1.0 PREDICTED: Glycine max regulation of nuclear pre-mRNA domain-containing protein 1A-like (LOC100806108), transcript variant X3, mRNA regulation of nuclear pre-mRNA domain-containing protein 1A-like(LOC100806108) coding protein psRNATarget
XM_014771890.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  =|||*|||||||||||||||
targets:396   GUCAAGGUUUUAAAUUGCGG   415

1.0 PREDICTED: Glycine max regulation of nuclear pre-mRNA domain-containing protein 1A-like (LOC100806108), transcript variant X2, mRNA regulation of nuclear pre-mRNA domain-containing protein 1A-like(LOC100806108) coding protein psRNATarget
XM_006604097.2
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  =|||*|||||||||||||||
targets:521   GUCAAGGUUUUAAAUUGCGG   540

1.0 PREDICTED: Glycine max regulation of nuclear pre-mRNA domain-containing protein 1A-like (LOC100806108), transcript variant X17, mRNA regulation of nuclear pre-mRNA domain-containing protein 1A-like(LOC100806108) coding protein psRNATarget
XM_014771889.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  =|||*|||||||||||||||
targets:523   GUCAAGGUUUUAAAUUGCGG   542

1.0 PREDICTED: Glycine max regulation of nuclear pre-mRNA domain-containing protein 1A-like (LOC100806108), transcript variant X1, mRNA regulation of nuclear pre-mRNA domain-containing protein 1A-like(LOC100806108) coding protein psRNATarget
XM_014769939.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  *||||||||||||||||=||
targets:49   UUCAUGGUUUUAAAUUGUGG   68

1.5 PREDICTED: Glycine max cirhin-like (LOC100776641), transcript variant X4, mRNA cirhin-like(LOC100776641) coding protein psRNATarget
XM_006601995.2
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  =*||*|||||||||||||||
targets:340   GACAAGGUUUUAAAUUGCGG   359

2.0 PREDICTED: Glycine max B3 domain-containing transcription repressor VAL1 (LOC100789147), transcript variant X8, mRNA B3 domain-containing transcription repressor VAL1(LOC100789147) coding protein psRNATarget
XM_006601996.2
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  =*||*|||||||||||||||
targets:358   GACAAGGUUUUAAAUUGCGG   377

2.0 PREDICTED: Glycine max B3 domain-containing transcription repressor VAL1 (LOC100789147), transcript variant X7, mRNA B3 domain-containing transcription repressor VAL1(LOC100789147) coding protein psRNATarget
XM_014771009.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  =*||*|||||||||||||||
targets:565   GACAAGGUUUUAAAUUGCGG   584

2.0 PREDICTED: Glycine max B3 domain-containing transcription repressor VAL1 (LOC100789147), transcript variant X6, mRNA B3 domain-containing transcription repressor VAL1(LOC100789147) coding protein psRNATarget
XM_014771008.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  =*||*|||||||||||||||
targets:583   GACAAGGUUUUAAAUUGCGG   602

2.0 PREDICTED: Glycine max B3 domain-containing transcription repressor VAL1 (LOC100789147), transcript variant X5, mRNA B3 domain-containing transcription repressor VAL1(LOC100789147) coding protein psRNATarget
XM_006601994.2
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  =*||*|||||||||||||||
targets:651   GACAAGGUUUUAAAUUGCGG   670

2.0 PREDICTED: Glycine max B3 domain-containing transcription repressor VAL1 (LOC100789147), transcript variant X3, mRNA B3 domain-containing transcription repressor VAL1(LOC100789147) coding protein psRNATarget
XM_014771007.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  =*||*|||||||||||||||
targets:669   GACAAGGUUUUAAAUUGCGG   688

2.0 PREDICTED: Glycine max B3 domain-containing transcription repressor VAL1 (LOC100789147), transcript variant X2, mRNA B3 domain-containing transcription repressor VAL1(LOC100789147) coding protein psRNATarget
XM_014771010.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  =*||*|||||||||||||||
targets:774   GACAAGGUUUUAAAUUGCGG   793

2.0 PREDICTED: Glycine max B3 domain-containing transcription repressor VAL1 (LOC100789147), transcript variant X10, mRNA B3 domain-containing transcription repressor VAL1(LOC100789147) coding protein psRNATarget
XM_006601993.2
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  =*||*|||||||||||||||
targets:676   GACAAGGUUUUAAAUUGCGG   695

2.0 PREDICTED: Glycine max B3 domain-containing transcription repressor VAL1 (LOC100789147), transcript variant X4, mRNA B3 domain-containing transcription repressor VAL1(LOC100789147) coding protein psRNATarget
XM_014771006.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  =*||*|||||||||||||||
targets:694   GACAAGGUUUUAAAUUGCGG   713

2.0 PREDICTED: Glycine max B3 domain-containing transcription repressor VAL1 (LOC100789147), transcript variant X1, mRNA B3 domain-containing transcription repressor VAL1(LOC100789147) coding protein psRNATarget
XM_006593968.2
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  |*|||||||||||||||=||
targets:1980   ACCAUGGUUUUAAAUUGUGG   1999

2.5 PREDICTED: Glycine max serine/threonine-protein kinase tricorner-like (LOC100820558), transcript variant X7, mRNA serine/threonine-protein kinase tricorner-like(LOC100820558) coding protein psRNATarget
XM_006593967.2
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  |*|||||||||||||||=||
targets:1992   ACCAUGGUUUUAAAUUGUGG   2011

2.5 PREDICTED: Glycine max serine/threonine-protein kinase tricorner-like (LOC100820558), transcript variant X1, mRNA serine/threonine-protein kinase tricorner-like(LOC100820558) coding protein psRNATarget
XM_014765477.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  |*|||||||||||||||=||
targets:2064   ACCAUGGUUUUAAAUUGUGG   2083

2.5 PREDICTED: Glycine max serine/threonine-protein kinase tricorner-like (LOC100820558), transcript variant X2, mRNA serine/threonine-protein kinase tricorner-like(LOC100820558) coding protein psRNATarget
XM_014779393.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  |||||||||||||||*|||*
targets:751   AUCAUGGUUUUAAAUAGCGU   770

2.5 PREDICTED: Glycine max actin-related protein 2/3 complex subunit 1B-like (LOC100778212), transcript variant X3, mRNA actin-related protein 2/3 complex subunit 1B-like(LOC100778212) coding protein psRNATarget
XM_014766590.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  *|||*||||||||||||=||
targets:775   UUCAAGGUUUUAAAUUGUGG   794

2.5 PREDICTED: Glycine max uncharacterized LOC100781768 (LOC100781768), mRNA uncharacterized LOC100781768(LOC100781768) coding protein psRNATarget
XM_014770847.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  =|||*|||||||||*|||||
targets:194   GUCAGGGUUUUAAAAUGCGG   213

2.5 PREDICTED: Glycine max kinesin-like protein KIF22 (LOC100795452), transcript variant X2, mRNA kinesin-like protein KIF22(LOC100795452) coding protein psRNATarget
XM_006604140.2
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  *|||*||||||*||||||||
targets:1541   UUCAAGGUUUUCAAUUGCGG   1560

2.5 PREDICTED: Glycine max UPF0496 protein At3g19330-like (LOC102665502), mRNA UPF0496 protein At3g19330-like(LOC102665502) coding protein psRNATarget
XM_014776395.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  |*==||||||||||||||||
targets:876   ACUGUGGUUUUAAAUUGCGG   895

3.0 PREDICTED: Glycine max protein DEFECTIVE IN MERISTEM SILENCING 3-like (LOC100813482), transcript variant X3, mRNA protein DEFECTIVE IN MERISTEM SILENCING 3-like(LOC100813482) coding protein psRNATarget
XM_014776397.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  |*==||||||||||||||||
targets:883   ACUGUGGUUUUAAAUUGCGG   902

3.0 PREDICTED: Glycine max protein DEFECTIVE IN MERISTEM SILENCING 3-like (LOC100813482), transcript variant X4, mRNA protein DEFECTIVE IN MERISTEM SILENCING 3-like(LOC100813482) coding protein psRNATarget
XM_014776393.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  |*==||||||||||||||||
targets:886   ACUGUGGUUUUAAAUUGCGG   905

3.0 PREDICTED: Glycine max protein DEFECTIVE IN MERISTEM SILENCING 3-like (LOC100813482), transcript variant X1, mRNA protein DEFECTIVE IN MERISTEM SILENCING 3-like(LOC100813482) coding protein psRNATarget
XM_014776394.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  |*==||||||||||||||||
targets:886   ACUGUGGUUUUAAAUUGCGG   905

3.0 PREDICTED: Glycine max protein DEFECTIVE IN MERISTEM SILENCING 3-like (LOC100813482), transcript variant X2, mRNA protein DEFECTIVE IN MERISTEM SILENCING 3-like(LOC100813482) coding protein psRNATarget
XM_014771897.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  ****||||||||||||||||
targets:278   UGGCUGGUUUUAAAUUGCGG   297

3.0 PREDICTED: Glycine max regulation of nuclear pre-mRNA domain-containing protein 1A-like (LOC100806108), transcript variant X9, mRNA regulation of nuclear pre-mRNA domain-containing protein 1A-like(LOC100806108) coding protein psRNATarget
XM_014771896.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  ****||||||||||||||||
targets:333   UGGCUGGUUUUAAAUUGCGG   352

3.0 PREDICTED: Glycine max regulation of nuclear pre-mRNA domain-containing protein 1A-like (LOC100806108), transcript variant X8, mRNA regulation of nuclear pre-mRNA domain-containing protein 1A-like(LOC100806108) coding protein psRNATarget
XM_014771895.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  ****||||||||||||||||
targets:386   UGGCUGGUUUUAAAUUGCGG   405

3.0 PREDICTED: Glycine max regulation of nuclear pre-mRNA domain-containing protein 1A-like (LOC100806108), transcript variant X7, mRNA regulation of nuclear pre-mRNA domain-containing protein 1A-like(LOC100806108) coding protein psRNATarget
XM_014771893.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  ****||||||||||||||||
targets:513   UGGCUGGUUUUAAAUUGCGG   532

3.0 PREDICTED: Glycine max regulation of nuclear pre-mRNA domain-containing protein 1A-like (LOC100806108), transcript variant X5, mRNA regulation of nuclear pre-mRNA domain-containing protein 1A-like(LOC100806108) coding protein psRNATarget
NM_001254472.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  |*||*||||||||||||||*
targets:1054   AGCAAGGUUUUAAAUUGCGA   1073

3.0 Glycine max protein TRANSPARENT TESTA 1-like (LOC100802773), mRNA protein TRANSPARENT TESTA 1-like(LOC100802773) coding protein psRNATarget
BT095932.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  |*||*||||||||||||||*
targets:1054   AGCAAGGUUUUAAAUUGCGA   1073

3.0 Soybean clone JCVI-FLGm-20I11 unknown mRNA NA coding protein psRNATarget
XM_014777907.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  |*||*||||||||||||||*
targets:89   AGCAAGGUUUUAAAUUGCGC   108

3.0 PREDICTED: Glycine max putative nuclease HARBI1 (LOC100778909), transcript variant X1, mRNA putative nuclease HARBI1(LOC100778909) coding protein psRNATarget
XM_014776396.1
ncRNA:20   UAGUACCAAAAUUUAACGCC   1
  |||||**||||||||||||*
targets:1276   AUCAUCAUUUUAAAUUGCGA   1295

3.0 PREDICTED: Glycine max uncharacterized LOC102669011 (LOC102669011), mRNA uncharacterized LOC102669011(LOC102669011) coding protein psRNATarget
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