Search result

BaseInfo

ncRNA ID novel_gma_miR3214
Species Glycine max
Class miRNA
Genome position Chr6:22446608-22446717 [-]
Reference genome Glycine_max_v2.0
Source SRR1451670;SRR1451672;SRR1451674;SRR1451676
Length 20
Mature sequence(if miRNA) 1 - UAAUGGAGAGCUCAUUUUAG - 20
Stem-loop(if miRNA) --                      CAAUUACCUA         A CU       -A   C
  AAAAUGAGCUCUCCAUUAGCUA          AUUUGUAGA G  CUCUCAU  UAG U
  ||||||||||||||||||||||          ||||||||| |  |||||||  ||| U
  UUUUACUCGAGAGGUAAUCGAU          UAAAUAUCU C  GAGAGUA  AUC C
GA                      ----------         A AG       GA   U
Stem-loop sequence AAAAUGAGCUCUCCAUUAGCUACAAUUACCUAAUUUGUAGAAGCUCUCUCAUAUAGCUUCUCUAAGAUGAGAGGACAUCUAUAAAUUAGCUAAUGGAGAGCUCAUUUUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006603606.2
ncRNA:20   GAUUUUACUCGAGAGGUAAU   1
  =||||||||*|||||||||*
targets:1454   UUAAAAUGACCUCUCCAUUU   1473

2.5 PREDICTED: Glycine max uncharacterized LOC100500460 (LOC100500460), transcript variant X1, mRNA uncharacterized LOC100500460(LOC100500460) coding protein psRNATarget
XM_006603608.2
ncRNA:20   GAUUUUACUCGAGAGGUAAU   1
  =||||||||*|||||||||*
targets:1464   UUAAAAUGACCUCUCCAUUU   1483

2.5 PREDICTED: Glycine max uncharacterized LOC100500460 (LOC100500460), transcript variant X3, mRNA uncharacterized LOC100500460(LOC100500460) coding protein psRNATarget