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BaseInfo

ncRNA ID	novel_gma_miR3211
Species	Glycine max
Class	miRNA
Genome position	Chr1:35216615-35216707 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451670;SRR1451674;SRR1451676
Length	20
Mature sequence(if miRNA)	74 - UUUGAAGGAAAAAAAAAAAA - 93
Stem-loop(if miRNA)	-           AG         UU    UUAC    AGGAAAAGUU  UUUUUUUUUUU  UUUAAAAAG  GUUG    UCAA          U  |||||||||||  |||||||||  ||||    ||||  AAAAAAAAAAA  AAGUUUUUU  CGAU    AGUU          A A           GG         GC    --UA    AUAUAUAAUU
Stem-loop sequence	UUUUUUUUUUUAGUUUAAAAAGUUGUUGUUACUCAAAGGAAAAGUUUAUUAAUAUAUAUUGAAUUAGCCGUUUUUUGAAGGAAAAAAAAAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT098238.1	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   |||||||||||||||||||* targets:3   UUUUUUUUUUUUCCUUCAAC   22 Target Full Sequence	1.0	Soybean clone JCVI-FLGm-26H17 unknown mRNA	NA	coding protein	psRNATarget
BT099020.1	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   |||||||||||||||||||* targets:5   UUUUUUUUUUUUCCUUCAAU   24 Target Full Sequence	1.0	Soybean clone JCVI-FLGm-13I20 unknown mRNA	NA	coding protein	psRNATarget
XM_003523152.3	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   ||||*||||||||||||||| targets:183   UUUUGUUUUUUUCCUUCAAA   202 Target Full Sequence	1.0	PREDICTED: Glycine max aspartic proteinase nepenthesin-1-like (LOC100811294), mRNA	aspartic proteinase nepenthesin-1-like(LOC100811294)	coding protein	psRNATarget
XM_003531936.3	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   ||||*||||||||||||||| targets:274   UUUUAUUUUUUUCCUUCAAA   293 Target Full Sequence	1.0	PREDICTED: Glycine max mitochondrial uncoupling protein 5-like (LOC100797888), mRNA	mitochondrial uncoupling protein 5-like(LOC100797888)	coding protein	psRNATarget
BT094912.1	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   ||||||||||||=||||||| targets:5   UUUUUUUUUUUUUCUUCAAA   24 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-6M6 unknown mRNA	NA	coding protein	psRNATarget
BT097923.1	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   |||||||||||||=|||||| targets:5   UUUUUUUUUUUUCUUUCAAA   24 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-11H16 unknown mRNA	NA	coding protein	psRNATarget
BT098457.1	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   ||||||||||||=||||||| targets:9   UUUUUUUUUUUUUCUUCAAA   28 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-12B15 unknown mRNA	NA	coding protein	psRNATarget
XM_003536067.3	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   *|||||||||||=||||||| targets:274   GUUUUUUUUUUUUCUUCAAA   293 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100778089 (LOC100778089), mRNA	uncharacterized LOC100778089(LOC100778089)	coding protein	psRNATarget
BT098341.1	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   |||||||||||||||*|||| targets:7   UUUUUUUUUUUUCCUACAAA   26 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-23G21 unknown mRNA	NA	coding protein	psRNATarget
BT099260.1	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   ||||||||||||*||||||| targets:8   UUUUUUUUUUUUACUUCAAA   27 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-16L20 unknown mRNA	NA	coding protein	psRNATarget
BT099342.1	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   ||||||||||||||||*||| targets:9   UUUUUUUUUUUUCCUUGAAA   28 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-13P17 unknown mRNA	NA	coding protein	psRNATarget
XM_006594383.2	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   ||||||||||||||||||== targets:568   UUUUUUUUUUUUCCUUCAGG   587 Target Full Sequence	2.5	PREDICTED: Glycine max probable protein phosphatase 2C 35 (LOC100817563), transcript variant X2, mRNA	probable protein phosphatase 2C 35(LOC100817563)	coding protein	psRNATarget
XM_003542855.3	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   ||||||||||||||||||== targets:567   UUUUUUUUUUUUCCUUCAGG   586 Target Full Sequence	2.5	PREDICTED: Glycine max probable protein phosphatase 2C 35 (LOC100817563), transcript variant X3, mRNA	probable protein phosphatase 2C 35(LOC100817563)	coding protein	psRNATarget
XM_006594384.2	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   ||||||||||||||||||== targets:567   UUUUUUUUUUUUCCUUCAGG   586 Target Full Sequence	2.5	PREDICTED: Glycine max probable protein phosphatase 2C 35 (LOC100817563), transcript variant X4, mRNA	probable protein phosphatase 2C 35(LOC100817563)	coding protein	psRNATarget
XM_014765732.1	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   ||||||||||||||||||== targets:572   UUUUUUUUUUUUCCUUCAGG   591 Target Full Sequence	2.5	PREDICTED: Glycine max probable protein phosphatase 2C 35 (LOC100817563), transcript variant X5, mRNA	probable protein phosphatase 2C 35(LOC100817563)	coding protein	psRNATarget
XM_006594385.2	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   ||||||||||||||||||== targets:570   UUUUUUUUUUUUCCUUCAGG   589 Target Full Sequence	2.5	PREDICTED: Glycine max probable protein phosphatase 2C 35 (LOC100817563), transcript variant X6, mRNA	probable protein phosphatase 2C 35(LOC100817563)	coding protein	psRNATarget
AK244217.1	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   ||||||||||||||||=||* targets:1092   UUUUUUUUUUUUCCUUUAAU   1111 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-02-G17	NA	coding protein	psRNATarget
XM_003555318.3	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   |||||||||||||=|||||* targets:1529   UUUUUUUUUUUUCUUUCAAU   1548 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor TCP19-like (LOC100819475), transcript variant X1, mRNA	transcription factor TCP19-like(LOC100819475)	coding protein	psRNATarget
XM_006606025.2	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   |||||||||||||=|||||* targets:1523   UUUUUUUUUUUUCUUUCAAU   1542 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor TCP19-like (LOC100819475), transcript variant X2, mRNA	transcription factor TCP19-like(LOC100819475)	coding protein	psRNATarget
AK245726.1	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   ||||||||||||||||=||* targets:1779   UUUUUUUUUUUUCCUUUAAU   1798 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-39-L20	NA	coding protein	psRNATarget
XM_014772281.1	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   |||||||||||||=|||||* targets:1408   UUUUUUUUUUUUCUUUCAAU   1427 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor TCP19-like (LOC100819475), transcript variant X3, mRNA	transcription factor TCP19-like(LOC100819475)	coding protein	psRNATarget
BT099109.1	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   ||||||||||||=||||||* targets:7   UUUUUUUUUUUUUCUUCAAC   26 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-23L7 unknown mRNA	NA	coding protein	psRNATarget
BT097840.1	ncRNA:20   AAAAAAAAAAAAGGAAGUUU   1   ||||||||||||||||||=* targets:8   UUUUUUUUUUUUCCUUCAGU   27 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-26M10 unknown mRNA	NA	coding protein	psRNATarget
XM_006606198.2	ncRNA:20   AAAAAAAAAAAA-GGAAGUUU   1   ||||||||||||-|||||||| targets:19   UUUUUUUUUUUUGCCUUCAAA   39 Target Full Sequence	3.0	PREDICTED: Glycine max pumilio homolog 4-like (LOC100776550), transcript variant X2, mRNA	pumilio homolog 4-like(LOC100776550)	coding protein	psRNATarget
XM_014770201.1	ncRNA:20   AAAAAAAAAAAAGGAAG-UUU   1   |||||||||||||||||-||| targets:1750   UUUUUUUUUUUUCCUUCCAAA   1770 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100500691 (LOC100500691), transcript variant X2, mRNA	uncharacterized LOC100500691(LOC100500691)	coding protein	psRNATarget
XM_014770200.1	ncRNA:20   AAAAAAAAAAAAGGAAG-UUU   1   |||||||||||||||||-||| targets:1106   UUUUUUUUUUUUCCUUCCAAA   1126 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100500691 (LOC100500691), transcript variant X1, mRNA	uncharacterized LOC100500691(LOC100500691)	coding protein	psRNATarget
AK285959.1	ncRNA:20   AAAAAAAAAAAAGGAAG-UUU   1   |||||||||||||||||-||| targets:1002   UUUUUUUUUUUUCCUUCCAAA   1022 Target Full Sequence	3.0	Glycine max cDNA, clone: GMFL01-19-G01	NA	coding protein	psRNATarget
BT097969.1	ncRNA:20   AAAAAAAAAAAAGG-AAGUUU   1   ||||||||||||||-|||||| targets:11   UUUUUUUUUUUUCCCUUCAAA   31 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-11L20 unknown mRNA	NA	coding protein	psRNATarget
BT093649.1	ncRNA:20   AAAAAAAAAAAAG-GAAGUUU   1   |||||||||||||-||||||| targets:8   UUUUUUUUUUUUCGCUUCAAA   28 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-17H19 unknown mRNA	NA	coding protein	psRNATarget
BT094645.1	ncRNA:20   AAAAAAAAAAAAGGAA-GUUU   1   ||||||||||||||||-|||| targets:7   UUUUUUUUUUUUCCUUGCAAA   27 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-5L10 unknown mRNA	NA	coding protein	psRNATarget