Search result

BaseInfo

ncRNA ID	novel_gma_miR3205
Species	Glycine max
Class	miRNA
Genome position	Chr5:4981827-4981963 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451670
Length	20
Mature sequence(if miRNA)	118 - GUAUUUUUCUUUCUUUCUUU - 137
Stem-loop(if miRNA)	--  A                 G UUUUAUUGAU     ACAAU                    CAUUA   GU UUUUUCUUUCUUUCUUU U          AUUGC     UUAGUUUGAUUUAAUUUUAU     U   || ||||||||||||||||| |          |||||     ||||||||||||||||||||   CG AAGAGGAAGGAAGGAAG A          UAACG     AAUUAAGCUGGGUUAAGGUG     A GA  -                 G UAUGUCAGGU     ACAUU                    CCUUU
Stem-loop sequence	GUAUUUUUCUUUCUUUCUUUGUUUUUAUUGAUAUUGCACAAUUUAGUUUGAUUUAAUUUUAUCAUUAUAUUUCCGUGGAAUUGGGUCGAAUUAAUUACAGCAAUUGGACUGUAUAGGAAGGAAGGAAGGAGAAGCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003527699.3	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||||||||||||| targets:98   AAAGAAAGAAAGAAAAAUAC   117 Target Full Sequence	0.0	PREDICTED: Glycine max abscisic acid receptor PYL2-like (LOC100805641), mRNA	abscisic acid receptor PYL2-like(LOC100805641)	coding protein	psRNATarget
BT099409.1	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||||||||||||* targets:1223   AAAGAAAGAAAGAAAAAUAA   1242 Target Full Sequence	1.0	Soybean clone JCVI-FLGm-23L8 unknown mRNA	NA	coding protein	psRNATarget
XM_014762206.1	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||||||||||*|| targets:31   AAAGAAAGAAAGAAAAAAAC   50 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100798960 (LOC100798960), transcript variant X1, mRNA	uncharacterized LOC100798960(LOC100798960)	coding protein	psRNATarget
XM_006587358.2	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||||||||||*|| targets:30   AAAGAAAGAAAGAAAAAAAC   49 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100798960 (LOC100798960), transcript variant X3, mRNA	uncharacterized LOC100798960(LOC100798960)	coding protein	psRNATarget
XM_003542716.3	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   ||||||||||||||||||*| targets:83   AAAGAAAGAAAGAAAAAUUC   102 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100789737 (LOC100789737), mRNA	uncharacterized LOC100789737(LOC100789737)	coding protein	psRNATarget
AK244786.1	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   ||||||||||||||||||*| targets:38   AAAGAAAGAAAGAAAAAUUC   57 Target Full Sequence	1.5	Glycine max cDNA, clone: GMFL01-13-P21	NA	coding protein	psRNATarget
XM_006593448.2	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||||||||||*|| targets:205   AAAGAAAGAAAGAAAAAGAC   224 Target Full Sequence	1.5	PREDICTED: Glycine max pathogenesis-related homeodomain protein-like (LOC100815437), transcript variant X1, mRNA	pathogenesis-related homeodomain protein-like(LOC100815437)	coding protein	psRNATarget
XM_003543686.3	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||||||||||*|| targets:205   AAAGAAAGAAAGAAAAAGAC   224 Target Full Sequence	1.5	PREDICTED: Glycine max pathogenesis-related homeodomain protein-like (LOC100815437), transcript variant X2, mRNA	pathogenesis-related homeodomain protein-like(LOC100815437)	coding protein	psRNATarget
BT095026.1	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||||||||||*|| targets:1032   AAAGAAAGAAAGAAAAAAAC   1051 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-6J5 unknown mRNA	NA	coding protein	psRNATarget
XM_003532096.3	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   ||||||||||||||||=||* targets:17   AAAGAAAGAAAGAAAAGUAG   36 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor 3-like (LOC100795762), mRNA	ethylene-responsive transcription factor 3-like(LOC100795762)	coding protein	psRNATarget
XM_003551818.3	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   ||||||||||||||||=||* targets:29   AAAGAAAGAAAGAAAAGUAG   48 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor 7-like (LOC100782025), mRNA	ethylene-responsive transcription factor 7-like(LOC100782025)	coding protein	psRNATarget
XM_003552014.3	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||||||||=|||* targets:1073   AAAGAAAGAAAGAAAGAUAG   1092 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100802538 (LOC100802538), transcript variant X1, mRNA	uncharacterized LOC100802538(LOC100802538)	coding protein	psRNATarget
XM_003523967.3	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||=|||||||||* targets:170   AAAGAAAGAGAGAAAAAUAG   189 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100781345 (LOC100781345), mRNA	uncharacterized LOC100781345(LOC100781345)	coding protein	psRNATarget
XM_006581380.2	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   ||||||=||||||||||*|| targets:284   AAAGAAGGAAAGAAAAACAC   303 Target Full Sequence	2.5	PREDICTED: Glycine max VAN3-binding protein-like (LOC100815080), transcript variant X2, mRNA	VAN3-binding protein-like(LOC100815080)	coding protein	psRNATarget
XM_003544637.3	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |=|||||||||||||*|||| targets:137   AGAGAAAGAAAGAAACAUAC   156 Target Full Sequence	2.5	PREDICTED: Glycine max UDP-galactose transporter 1-like (LOC100817042), mRNA	UDP-galactose transporter 1-like(LOC100817042)	coding protein	psRNATarget
XM_003552406.3	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||||||||||*|= targets:101   AAAGAAAGAAAGAAAAAAAU   120 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100793358 (LOC100793358), mRNA	uncharacterized LOC100793358(LOC100793358)	coding protein	psRNATarget
BT098297.1	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   *||||||||=|||||||||* targets:163   UAAGAAAGAGAGAAAAAUAA   182 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-12E8 unknown mRNA	NA	coding protein	psRNATarget
XM_003517506.3	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||||||||||*|* targets:389   AAAGAAAGAAAGAAAAAAAG   408 Target Full Sequence	2.5	PREDICTED: Glycine max WEB family protein At3g02930, chloroplastic-like (LOC100795783), mRNA	WEB family protein At3g02930, chloroplastic-like(LOC100795783)	coding protein	psRNATarget
XM_003556758.3	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||||||||||*|* targets:292   AAAGAAAGAAAGAAAAAAAA   311 Target Full Sequence	2.5	PREDICTED: Glycine max TPR repeat-containing thioredoxin TTL1-like (LOC100805790), mRNA	TPR repeat-containing thioredoxin TTL1-like(LOC100805790)	coding protein	psRNATarget
XM_003548702.3	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||||||||||*|* targets:75   AAAGAAAGAAAGAAAAAAAG   94 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100801967 (LOC100801967), transcript variant X1, mRNA	uncharacterized LOC100801967(LOC100801967)	coding protein	psRNATarget
XM_006598918.2	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||||||||||*|* targets:81   AAAGAAAGAAAGAAAAAAAG   100 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100801967 (LOC100801967), transcript variant X2, mRNA	uncharacterized LOC100801967(LOC100801967)	coding protein	psRNATarget
XM_003543447.3	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||||||||||*|* targets:1959   AAAGAAAGAAAGAAAAAAAA   1978 Target Full Sequence	2.5	PREDICTED: Glycine max 3-ketoacyl-CoA synthase 12-like (LOC100776947), mRNA	3-ketoacyl-CoA synthase 12-like(LOC100776947)	coding protein	psRNATarget
XM_006574968.2	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   ||||||||||||*||||||* targets:118   AAAGAAAGAAAGUAAAAUAA   137 Target Full Sequence	2.5	PREDICTED: Glycine max protein IQ-DOMAIN 14 (LOC100814804), transcript variant X1, mRNA	protein IQ-DOMAIN 14(LOC100814804)	coding protein	psRNATarget
XM_003518827.3	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   ||||||||||||*||||||* targets:118   AAAGAAAGAAAGUAAAAUAA   137 Target Full Sequence	2.5	PREDICTED: Glycine max protein IQ-DOMAIN 14 (LOC100814804), transcript variant X4, mRNA	protein IQ-DOMAIN 14(LOC100814804)	coding protein	psRNATarget
XM_006574969.2	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   ||||||||||||*||||||* targets:118   AAAGAAAGAAAGUAAAAUAA   137 Target Full Sequence	2.5	PREDICTED: Glycine max protein IQ-DOMAIN 14 (LOC100814804), transcript variant X2, mRNA	protein IQ-DOMAIN 14(LOC100814804)	coding protein	psRNATarget
XM_014767063.1	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   ||||||||||||*||||||* targets:118   AAAGAAAGAAAGUAAAAUAA   137 Target Full Sequence	2.5	PREDICTED: Glycine max protein IQ-DOMAIN 14 (LOC100814804), transcript variant X5, mRNA	protein IQ-DOMAIN 14(LOC100814804)	coding protein	psRNATarget
XM_014767058.1	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   ||||||||||||*||||||* targets:77   AAAGAAAGAAAGUAAAAUAA   96 Target Full Sequence	2.5	PREDICTED: Glycine max protein IQ-DOMAIN 14 (LOC100814804), transcript variant X3, mRNA	protein IQ-DOMAIN 14(LOC100814804)	coding protein	psRNATarget
XM_014763758.1	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||||||||||*|* targets:1163   AAAGAAAGAAAGAAAAAAAA   1182 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor ERF021-like (LOC100815719), mRNA	ethylene-responsive transcription factor ERF021-like(LOC100815719)	coding protein	psRNATarget
XM_003542617.3	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||||||||||*|* targets:116   AAAGAAAGAAAGAAAAAAAA   135 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100781021 (LOC100781021), mRNA	uncharacterized LOC100781021(LOC100781021)	coding protein	psRNATarget
BT089269.1	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||||||||||*|* targets:11   AAAGAAAGAAAGAAAAAAAA   30 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-1F3 unknown mRNA	NA	coding protein	psRNATarget
NM_001250663.1	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||||||||||*|* targets:11   AAAGAAAGAAAGAAAAAAAA   30 Target Full Sequence	2.5	Glycine max uncharacterized LOC100305592 (LOC100305592), mRNA	uncharacterized LOC100305592(LOC100305592)	coding protein	psRNATarget
BT096773.1	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |||||||||||||||||*|* targets:289   AAAGAAAGAAAGAAAAAAAG   308 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-21M9 unknown mRNA	NA	coding protein	psRNATarget
XM_006589613.2	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   *|||||||||||||||||** targets:2289   CAAGAAAGAAAGAAAAAUCA   2308 Target Full Sequence	2.5	PREDICTED: Glycine max probable serine/threonine-protein kinase At1g18390 (LOC100778085), mRNA	probable serine/threonine-protein kinase At1g18390(LOC100778085)	coding protein	psRNATarget
XM_003546037.3	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   =|||||||||||||||*||= targets:11   GAAGAAAGAAAGAAAAUUAU   30 Target Full Sequence	2.5	PREDICTED: Glycine max mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3-like (LOC100806551), mRNA	mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3-like(LOC100806551)	coding protein	psRNATarget
XM_014765047.1	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |=|||=|||||||||||||* targets:446   AGAGAGAGAAAGAAAAAUAG   465 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100815732 (LOC100815732), mRNA	uncharacterized LOC100815732(LOC100815732)	coding protein	psRNATarget
XM_003545237.3	ncRNA:20   UUUCUUUCUUUCUUUUUAUG   1   |=|||=|||||||||||||* targets:91   AGAGAGAGAAAGAAAAAUAA   110 Target Full Sequence	3.0	PREDICTED: Glycine max calcium uniporter protein 4, mitochondrial-like (LOC100807242), mRNA	calcium uniporter protein 4, mitochondrial-like(LOC100807242)	coding protein	psRNATarget