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BaseInfo

ncRNA ID	novel_gma_miR3200
Species	Glycine max
Class	miRNA
Genome position	Chr5:40668498-40668564 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451670
Length	20
Mature sequence(if miRNA)	48 - UUCCAUGCAUUCACGCAGUC - 67
Stem-loop(if miRNA)	--                   -   CAG   AAU   UUCCAUGCAUUCACGCAGU CAG   CUC   G   ||||||||||||||||||| |||   |||   U   AAGGUGCGUAAGUGUGUCA GUC   GAG   A UA                   A   -UA   CGU
Stem-loop sequence	UUCCAUGCAUUCACGCAGUCAGCAGCUCAAUGUAUGCGAGAUCUGAACUGUGUGAAUGCGUGGAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK246098.1	ncRNA:20   CUGACGCACUUACGUACCUU   1   |||||||||||||||||||| targets:721   GACUGCGUGAAUGCAUGGAA   740 Target Full Sequence	0.0	Glycine max cDNA, clone: GMFL01-51-J07	NA	coding protein	psRNATarget
XM_006580411.2	ncRNA:20   CUGACGCACUUACGUACCUU   1   |||||||||||||||||||| targets:851   GACUGCGUGAAUGCAUGGAA   870 Target Full Sequence	0.0	PREDICTED: Glycine max transmembrane protein 234 homolog (LOC102665209), transcript variant X2, mRNA	transmembrane protein 234 homolog(LOC102665209)	coding protein	psRNATarget
XM_003520752.3	ncRNA:20   CUGACGCACUUACGUACCUU   1   |||||=|||||||||||||* targets:1274   GACUGUGUGAAUGCAUGGAU   1293 Target Full Sequence	2.0	PREDICTED: Glycine max pescadillo homolog (LOC100819628), mRNA	pescadillo homolog(LOC100819628)	coding protein	psRNATarget
BT097481.1	ncRNA:20   CUGACGCACUUACGUACCUU   1   ||=|||*||||||||||||| targets:863   GAUUGCCUGAAUGCAUGGAA   882 Target Full Sequence	2.0	Soybean clone JCVI-FLGm-16M15 unknown mRNA	NA	coding protein	psRNATarget
NM_001317707.1	ncRNA:20   CUGACGCACUUACGUACCUU   1   ||=|||*||||||||||||| targets:863   GAUUGCCUGAAUGCAUGGAA   882 Target Full Sequence	2.0	Glycine max kelch-like protein 28 (LOC100775668), mRNA	kelch-like protein 28(LOC100775668)	coding protein	psRNATarget
XM_003545819.3	ncRNA:20   CUGACGCACUUACGUACCUU   1   ||=|||*||||||||||||| targets:2548   GAUUGCUUGAAUGCAUGGAA   2567 Target Full Sequence	2.0	PREDICTED: Glycine max influenza virus NS1A-binding protein homolog A-like (LOC100786730), mRNA	influenza virus NS1A-binding protein homolog A-like(LOC100786730)	coding protein	psRNATarget
XM_003524352.3	ncRNA:20   CUGACGCACUUACGUACCUU   1   *||||=||||||||=||||| targets:1088   AACUGUGUGAAUGCGUGGAA   1107 Target Full Sequence	2.5	PREDICTED: Glycine max probable xyloglucan endotransglucosylase/hydrolase protein 26 (LOC100788487), mRNA	probable xyloglucan endotransglucosylase/hydrolase protein 26(LOC100788487)	coding protein	psRNATarget
XM_003528052.3	ncRNA:20   CUGACGCACUUACGUACCUU   1   ||*|*||||||||||||||= targets:523   GAGUUCGUGAAUGCAUGGAG   542 Target Full Sequence	3.0	PREDICTED: Glycine max omega-hydroxypalmitate O-feruloyl transferase-like (LOC100794490), transcript variant X1, mRNA	omega-hydroxypalmitate O-feruloyl transferase-like(LOC100794490)	coding protein	psRNATarget
XM_006581792.2	ncRNA:20   CUGACGCACUUACGUACCUU   1   ||*|*||||||||||||||= targets:597   GAGUUCGUGAAUGCAUGGAG   616 Target Full Sequence	3.0	PREDICTED: Glycine max omega-hydroxypalmitate O-feruloyl transferase-like (LOC100794490), transcript variant X2, mRNA	omega-hydroxypalmitate O-feruloyl transferase-like(LOC100794490)	coding protein	psRNATarget