Search result

BaseInfo

ncRNA ID novel_gma_miR3195
Species Glycine max
Class miRNA
Genome position Chr11:21268215-21268280 [-]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 20
Mature sequence(if miRNA) 47 - AUUUGUGUGUGUAUAUAUAU - 66
Stem-loop(if miRNA) AU                              A
  UUGUGUGUGUAUAUAUAUAUAUAUAUAUAU U
  ||||||||||||||||||||||||||||||
  AAUAUAUAUAUAUAUAUAUAUAUAUAUAUA A
--                              U
Stem-loop sequence AUUUGUGUGUGUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006581278.2
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  ||||||||||||||||||||
targets:39   AUAUAUAUACACACACAAAU   58

0.0 PREDICTED: Glycine max uncharacterized LOC102660700 (LOC102660700), mRNA uncharacterized LOC102660700(LOC102660700) coding protein psRNATarget
XM_003518738.3
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  *|||||||||||||||||||
targets:237   UUAUAUAUACACACACAAAU   256

0.0 PREDICTED: Glycine max MADS-box protein CMB1-like (LOC100811049), mRNA MADS-box protein CMB1-like(LOC100811049) coding protein psRNATarget
S45092.1
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  ||||=|||||||||||||||
targets:63   AUAUGUAUACACACACAAAU   82

1.0 KTi3 (KTi3+)=Kunitz trypsin inhibitor [soybeans, Dare and Forrest, mRNA, 1259 nt] NA coding protein psRNATarget
XM_006588555.2
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  |||||||||=||||||||||
targets:4796   AUAUAUAUAUACACACAAAU   4815

1.5 PREDICTED: Glycine max protein HUA2-LIKE 2 (LOC100803427), transcript variant X1, mRNA protein HUA2-LIKE 2(LOC100803427) coding protein psRNATarget
XM_006588556.2
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  |||||||||=||||||||||
targets:4791   AUAUAUAUAUACACACAAAU   4810

1.5 PREDICTED: Glycine max protein HUA2-LIKE 2 (LOC100803427), transcript variant X2, mRNA protein HUA2-LIKE 2(LOC100803427) coding protein psRNATarget
XM_006588557.2
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  |||||||||=||||||||||
targets:4694   AUAUAUAUAUACACACAAAU   4713

1.5 PREDICTED: Glycine max protein HUA2-LIKE 2 (LOC100803427), transcript variant X3, mRNA protein HUA2-LIKE 2(LOC100803427) coding protein psRNATarget
XM_003523153.3
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  |||||||||||||||*||||
targets:1829   AUAUAUAUACACACAAAAAU   1848

1.5 PREDICTED: Glycine max ultraviolet-B receptor UVR8 (LOC100811823), mRNA ultraviolet-B receptor UVR8(LOC100811823) coding protein psRNATarget
XM_006584668.2
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  |||||||||||||||||*||
targets:443   AUAUAUAUACACACACACAU   462

1.5 PREDICTED: Glycine max probable polygalacturonase (LOC100803375), transcript variant X1, mRNA probable polygalacturonase(LOC100803375) coding protein psRNATarget
XM_003532878.3
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  |||||||||||||||||*||
targets:429   AUAUAUAUACACACACACAU   448

1.5 PREDICTED: Glycine max probable polygalacturonase (LOC100803375), transcript variant X2, mRNA probable polygalacturonase(LOC100803375) coding protein psRNATarget
XM_003545645.3
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  |||||||||||||||||*||
targets:1778   AUAUAUAUACACACACAUAU   1797

1.5 PREDICTED: Glycine max dihydropyrimidinase (LOC100797867), mRNA dihydropyrimidinase(LOC100797867) coding protein psRNATarget
AK243949.1
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  |||||||||||||||||*||
targets:1712   AUAUAUAUACACACACAUAU   1731

1.5 Glycine max cDNA, clone: GMFL01-01-L03 NA coding protein psRNATarget
XM_014775407.1
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  |||||||||||||||||*||
targets:1460   AUAUAUAUACACACACAUAU   1479

1.5 PREDICTED: Glycine max dof zinc finger protein DOF5.4-like (LOC100800458), mRNA dof zinc finger protein DOF5.4-like(LOC100800458) coding protein psRNATarget
XM_003518649.3
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  |||||||||||||||||*||
targets:111   AUAUAUAUACACACACAUAU   130

1.5 PREDICTED: Glycine max gibberellin 2-beta-dioxygenase 2-like (LOC100809097), mRNA gibberellin 2-beta-dioxygenase 2-like(LOC100809097) coding protein psRNATarget
XM_006583788.2
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  |||||||||||||||||*||
targets:76   AUAUAUAUACACACACACAU   95

1.5 PREDICTED: Glycine max (+)-neomenthol dehydrogenase-like (LOC100787800), mRNA (+)-neomenthol dehydrogenase-like(LOC100787800) coding protein psRNATarget
XM_014764404.1
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  *|||||||||||*|||||||
targets:6   UUAUAUAUACACUCACAAAU   25

1.5 PREDICTED: Glycine max probable tocopherol O-methyltransferase, chloroplastic (LOC100778509), transcript variant X1, mRNA probable tocopherol O-methyltransferase, chloroplastic(LOC100778509) coding protein psRNATarget
XM_003517441.3
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  |||||||||||||||||=|*
targets:4   AUAUAUAUACACACACAGAG   23

2.5 PREDICTED: Glycine max probable membrane-associated kinase regulator 2 (LOC100807473), mRNA probable membrane-associated kinase regulator 2(LOC100807473) coding protein psRNATarget
XM_003556499.3
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  ||||||||||||||||||**
targets:161   AUAUAUAUACACACACAAUA   180

2.5 PREDICTED: Glycine max ABC transporter G family member 6-like (LOC100803658), mRNA ABC transporter G family member 6-like(LOC100803658) coding protein psRNATarget
XM_014777657.1
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  *||||||||||||||||=|*
targets:274   CUAUAUAUACACACACAGAC   293

2.5 PREDICTED: Glycine max probable transcription factor KAN2 (LOC100816381), mRNA probable transcription factor KAN2(LOC100816381) coding protein psRNATarget
XM_003547964.3
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  |||||||||||||||||*|*
targets:4088   AUAUAUAUACACACACACAC   4107

2.5 PREDICTED: Glycine max uncharacterized LOC100794694 (LOC100794694), mRNA uncharacterized LOC100794694(LOC100794694) coding protein psRNATarget
XM_006577823.2
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  |||||||||||||||||*|*
targets:3246   AUAUAUAUACACACACACAC   3265

2.5 PREDICTED: Glycine max alanine--tRNA ligase, chloroplastic/mitochondrial-like (LOC100788288), mRNA alanine--tRNA ligase, chloroplastic/mitochondrial-like(LOC100788288) coding protein psRNATarget
XM_003523774.3
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  ||||||||*||||||||||*
targets:134   AUAUAUAUCCACACACAAAC   153

2.5 PREDICTED: Glycine max TPR repeat-containing thioredoxin TTL1-like (LOC100787041), mRNA TPR repeat-containing thioredoxin TTL1-like(LOC100787041) coding protein psRNATarget
XM_003520746.3
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  |||||||||||||||||*|*
targets:80   AUAUAUAUACACACACACAC   99

2.5 PREDICTED: Glycine max calmodulin-binding protein 60 D-like (LOC100816427), mRNA calmodulin-binding protein 60 D-like(LOC100816427) coding protein psRNATarget
XM_014762012.1
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  |||||||||||||||||*|*
targets:1643   AUAUAUAUACACACACACAC   1662

2.5 PREDICTED: Glycine max FAM206 family protein CG9288-like (LOC100819401), transcript variant X1, mRNA FAM206 family protein CG9288-like(LOC100819401) coding protein psRNATarget
XM_014774174.1
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  *||||*|||=||||||||||
targets:8009   CUAUAAAUAUACACACAAAU   8028

2.5 PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 25-like (LOC100789451), transcript variant X8, mRNA mediator of RNA polymerase II transcription subunit 25-like(LOC100789451) coding protein psRNATarget
XM_014774155.1
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  *||||*|||=||||||||||
targets:3148   CUAUAAAUAUACACACAAAU   3167

2.5 PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 25-like (LOC100789451), transcript variant X1, mRNA mediator of RNA polymerase II transcription subunit 25-like(LOC100789451) coding protein psRNATarget
XM_006573195.2
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  *||||*|||=||||||||||
targets:3109   CUAUAAAUAUACACACAAAU   3128

2.5 PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 25-like (LOC100789451), transcript variant X9, mRNA mediator of RNA polymerase II transcription subunit 25-like(LOC100789451) coding protein psRNATarget
XM_014774170.1
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  *||||*|||=||||||||||
targets:3109   CUAUAAAUAUACACACAAAU   3128

2.5 PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 25-like (LOC100789451), transcript variant X7, mRNA mediator of RNA polymerase II transcription subunit 25-like(LOC100789451) coding protein psRNATarget
XM_006573196.2
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  *||||*|||=||||||||||
targets:3109   CUAUAAAUAUACACACAAAU   3128

2.5 PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 25-like (LOC100789451), transcript variant X10, mRNA mediator of RNA polymerase II transcription subunit 25-like(LOC100789451) coding protein psRNATarget
XM_014774160.1
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  *||||*|||=||||||||||
targets:3068   CUAUAAAUAUACACACAAAU   3087

2.5 PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 25-like (LOC100789451), transcript variant X3, mRNA mediator of RNA polymerase II transcription subunit 25-like(LOC100789451) coding protein psRNATarget
XM_014774158.1
ncRNA:20   UAUAUAUAUGUGUGUGUUUA   1
  *||||*|||=||||||||||
targets:3148   CUAUAAAUAUACACACAAAU   3167

2.5 PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 25-like (LOC100789451), transcript variant X2, mRNA mediator of RNA polymerase II transcription subunit 25-like(LOC100789451) coding protein psRNATarget
BT095884.1
ncRNA:20   UAUAUAUAUGUGUGUGU-UUA   1
  |||||||||||||||||-|||
targets:30   AUAUAUAUACACACACACAAU   50

3.0 Soybean clone JCVI-FLGm-20C23 unknown mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.