Search result

BaseInfo

ncRNA ID novel_gma_miR3191
Species Glycine max
Class miRNA
Genome position Chr4:11085063-11085159 [-]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 20
Mature sequence(if miRNA) 1 - CUGAGAAUUCUUUUCCCAAA - 20
Stem-loop(if miRNA) ----UGC         --  AA GAACUAACUAUCUGAGAAUUCUUUUGAU
       CAAAAGAAU  UC  A                            U
       |||||||||  ||  |                            C
       UUUCUUAAG  UC  U                            C
AAACCCU         AG  -- GCCAAUCAAGAAACUUAAGAAACAAACC
Stem-loop sequence UGCCAAAAGAAUUCAAAGAACUAACUAUCUGAGAAUUCUUUUGAUUCCCCAAACAAAGAAUUCAAAGAACUAACCGUCUGAGAAUUCUUUUCCCAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014765583.1
ncRNA:20   AAACCCUUUUCUUAAGAGUC   1
  *|||||||||||=|||||||
targets:629   AUUGGGAAAAGAGUUCUCAG   648

1.5 PREDICTED: Glycine max uncharacterized LOC100811149 (LOC100811149), transcript variant X4, mRNA uncharacterized LOC100811149(LOC100811149) coding protein psRNATarget
XM_006594176.2
ncRNA:20   AAACCCUUUUCUUAAGAGUC   1
  *|||||||||||=|||||||
targets:632   AUUGGGAAAAGAGUUCUCAG   651

1.5 PREDICTED: Glycine max uncharacterized LOC100811149 (LOC100811149), transcript variant X2, mRNA uncharacterized LOC100811149(LOC100811149) coding protein psRNATarget
XM_006594177.2
ncRNA:20   AAACCCUUUUCUUAAGAGUC   1
  *|||||||||||=|||||||
targets:646   AUUGGGAAAAGAGUUCUCAG   665

1.5 PREDICTED: Glycine max uncharacterized LOC100811149 (LOC100811149), transcript variant X3, mRNA uncharacterized LOC100811149(LOC100811149) coding protein psRNATarget
XM_006594175.2
ncRNA:20   AAACCCUUUUCUUAAGAGUC   1
  *|||||||||||=|||||||
targets:649   AUUGGGAAAAGAGUUCUCAG   668

1.5 PREDICTED: Glycine max uncharacterized LOC100811149 (LOC100811149), transcript variant X1, mRNA uncharacterized LOC100811149(LOC100811149) coding protein psRNATarget