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BaseInfo

ncRNA ID novel_gma_miR3183
Species Glycine max
Class miRNA
Genome position Chr3:3887659-3887704 [-]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 20
Mature sequence(if miRNA) 27 - AAACACAACAACACAAGUGU - 46
Stem-loop(if miRNA) ------------AA      C      A
              ACACAA AACACA G
              |||||| ||||||
              UGUGUU UUGUGU U
UGUUUGUGCAUGUG      U      G
Stem-loop sequence AAACACAACAACACAAGUGUGUGUUUUUGUGUGUGUACGUGUUUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014775733.1
ncRNA:20   UGUGAACACAACAACACAAA   1
  |*||||*|||||||||||||
targets:251   AGACUUUUGUUGUUGUGUUU   270

2.0 PREDICTED: Glycine max F-box protein At1g10780-like (LOC100818247), transcript variant X2, mRNA F-box protein At1g10780-like(LOC100818247) coding protein psRNATarget
XM_006584694.2
ncRNA:20   UGUGAACACAACAACACAAA   1
  |||*||||||*|||||||||
targets:249   ACAAUUGUGUGGUUGUGUUU   268

2.5 PREDICTED: Glycine max protein trichome birefringence-like 23 (LOC100779118), mRNA protein trichome birefringence-like 23(LOC100779118) coding protein psRNATarget
XM_014772737.1
ncRNA:20   UGUGAACACAACAACACAAA   1
  |==||||||||||||||||*
targets:1330   AUGCUUGUGUUGUUGUGUUC   1349

3.0 PREDICTED: Glycine max uncharacterized protein At4g19900 (LOC100796743), transcript variant X2, mRNA uncharacterized protein At4g19900(LOC100796743) coding protein psRNATarget
XM_006605446.2
ncRNA:20   UGUGAACACAACAACACAAA   1
  |==||||||||||||||||*
targets:1330   AUGCUUGUGUUGUUGUGUUC   1349

3.0 PREDICTED: Glycine max uncharacterized protein At4g19900 (LOC100796743), transcript variant X1, mRNA uncharacterized protein At4g19900(LOC100796743) coding protein psRNATarget