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BaseInfo

ncRNA ID novel_gma_miR3182
Species Glycine max
Class miRNA
Genome position Chr11:27174058-27174126 [-]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 20
Mature sequence(if miRNA) 50 - UGAUAAUGAUGAUUAUUGUG - 69
Stem-loop(if miRNA) U        U  -         CUUAG    UUUA
 GAUAAUGA GA UUAUUGUGG     UCAU    G
 |||||||| || |||||||||     ||||    G
 UUGUUAUU CU AGUAACACC     AGUA    U
-        C  G         --AAA    CUGU
Stem-loop sequence UGAUAAUGAUGAUUAUUGUGGCUUAGUCAUUUUAGGUUGUCAUGAAAACCACAAUGAGUCCUUAUUGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003529818.3
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  *||||||||||||||*||||
targets:466   AACAAUAAUCAUCAUCAUCA   485

1.5 PREDICTED: Glycine max B3 domain-containing protein Os03g0120900-like (LOC100778733), transcript variant X1, mRNA B3 domain-containing protein Os03g0120900-like(LOC100778733) coding protein psRNATarget
XM_006583129.2
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  *||||||||||||||*||||
targets:272   AACAAUAAUCAUCAUCAUCA   291

1.5 PREDICTED: Glycine max B3 domain-containing protein Os03g0120900-like (LOC100778733), transcript variant X2, mRNA B3 domain-containing protein Os03g0120900-like(LOC100778733) coding protein psRNATarget
XM_006575556.2
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  ||*|||*|||||||||||||
targets:149   CAGAAUCAUCAUCAUUAUCA   168

2.0 PREDICTED: Glycine max uncharacterized LOC100818525 (LOC100818525), transcript variant X1, mRNA uncharacterized LOC100818525(LOC100818525) coding protein psRNATarget
XM_006575557.2
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  ||*|||*|||||||||||||
targets:68   CAGAAUCAUCAUCAUUAUCA   87

2.0 PREDICTED: Glycine max uncharacterized LOC100818525 (LOC100818525), transcript variant X2, mRNA uncharacterized LOC100818525(LOC100818525) coding protein psRNATarget
XM_003555022.3
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  =|||||=||||*||||||||
targets:1825   UACAAUGAUCACCAUUAUCA   1844

2.5 PREDICTED: Glycine max putative endo-1,3(4)-beta-glucanase 2 (LOC100796721), mRNA putative endo-1,3(4)-beta-glucanase 2(LOC100796721) coding protein psRNATarget
XM_003541208.3
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  =|||||=||||*||||||||
targets:1875   UACAAUGAUCACCAUUAUCA   1894

2.5 PREDICTED: Glycine max putative endo-1,3(4)-beta-glucanase 2 (LOC100779224), mRNA putative endo-1,3(4)-beta-glucanase 2(LOC100779224) coding protein psRNATarget
XM_003552520.3
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  =|||||=||||*||||||||
targets:1404   UACAAUGAUCACCAUUAUCA   1423

2.5 PREDICTED: Glycine max putative endo-1,3(4)-beta-glucanase 2 (LOC100808584), mRNA putative endo-1,3(4)-beta-glucanase 2(LOC100808584) coding protein psRNATarget
XM_003531807.3
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  =|||||=||||*||||||||
targets:1276   UACAAUGAUCACCAUUAUCA   1295

2.5 PREDICTED: Glycine max endo-1,3(4)-beta-glucanase 1-like (LOC100818841), mRNA endo-1,3(4)-beta-glucanase 1-like(LOC100818841) coding protein psRNATarget
AK243710.1
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  =|||||=||||*||||||||
targets:1251   UACAAUGAUCACCAUUAUCA   1270

2.5 Glycine max cDNA, clone: GMFL01-01-A18 NA coding protein psRNATarget
XM_014774476.1
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  =|=||||||||||||*||||
targets:1187   UAUAAUAAUCAUCAUCAUCA   1206

2.5 PREDICTED: Glycine max uncharacterized LOC100807540 (LOC100807540), transcript variant X1, mRNA uncharacterized LOC100807540(LOC100807540) coding protein psRNATarget
XM_006578011.2
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  =|=||||||||||||*||||
targets:1181   UAUAAUAAUCAUCAUCAUCA   1200

2.5 PREDICTED: Glycine max uncharacterized LOC100807540 (LOC100807540), transcript variant X3, mRNA uncharacterized LOC100807540(LOC100807540) coding protein psRNATarget
XM_003522180.3
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  =|=||||||||||||*||||
targets:1034   UAUAAUAAUCAUCAUCAUCA   1053

2.5 PREDICTED: Glycine max uncharacterized LOC100807540 (LOC100807540), transcript variant X2, mRNA uncharacterized LOC100807540(LOC100807540) coding protein psRNATarget
XM_014777263.1
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  *|=||||||||||||*||||
targets:954   AAUAAUAAUCAUCAUCAUCA   973

2.5 PREDICTED: Glycine max uncharacterized LOC100790617 (LOC100790617), transcript variant X3, mRNA uncharacterized LOC100790617(LOC100790617) coding protein psRNATarget
XM_014777262.1
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  *|=||||||||||||*||||
targets:882   AAUAAUAAUCAUCAUCAUCA   901

2.5 PREDICTED: Glycine max uncharacterized LOC100790617 (LOC100790617), transcript variant X2, mRNA uncharacterized LOC100790617(LOC100790617) coding protein psRNATarget
XM_003525930.3
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  *|=||||||||||||*||||
targets:866   AAUAAUAAUCAUCAUCAUCA   885

2.5 PREDICTED: Glycine max uncharacterized LOC100790617 (LOC100790617), transcript variant X1, mRNA uncharacterized LOC100790617(LOC100790617) coding protein psRNATarget
XM_006581222.2
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  *|=||||||||||||*||||
targets:866   AAUAAUAAUCAUCAUCAUCA   885

2.5 PREDICTED: Glycine max uncharacterized LOC100790617 (LOC100790617), transcript variant X5, mRNA uncharacterized LOC100790617(LOC100790617) coding protein psRNATarget
XM_014777264.1
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  *|=||||||||||||*||||
targets:790   AAUAAUAAUCAUCAUCAUCA   809

2.5 PREDICTED: Glycine max uncharacterized LOC100790617 (LOC100790617), transcript variant X4, mRNA uncharacterized LOC100790617(LOC100790617) coding protein psRNATarget
XM_014778532.1
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  |||||*||||||||||||*|
targets:1379   CACAAAAAUCAUCAUUAUAA   1398

2.5 PREDICTED: Glycine max uncharacterized LOC100777856 (LOC100777856), mRNA uncharacterized LOC100777856(LOC100777856) coding protein psRNATarget
XM_014778532.1
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  |||||*||||||||||||*|
targets:4205   CACAACAAUCAUCAUUAUAA   4224

2.5 PREDICTED: Glycine max uncharacterized LOC100777856 (LOC100777856), mRNA uncharacterized LOC100777856(LOC100777856) coding protein psRNATarget
AK244530.1
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  |||*||||||||||*|||||
targets:1201   CACCAUAAUCAUCAGUAUCA   1220

2.5 Glycine max cDNA, clone: GMFL01-06-B15 NA coding protein psRNATarget
XM_003534818.3
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  |||*||||||||||*|||||
targets:1262   CACCAUAAUCAUCAGUAUCA   1281

2.5 PREDICTED: Glycine max cytochrome b561 and DOMON domain-containing protein At5g47530 (LOC100803576), mRNA cytochrome b561 and DOMON domain-containing protein At5g47530(LOC100803576) coding protein psRNATarget
XM_003528774.3
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  ||||||*||||||||*||||
targets:399   CACAAUCAUCAUCAUCAUCA   418

2.5 PREDICTED: Glycine max sufE-like protein 1, chloroplastic/mitochondrial (LOC100779254), mRNA sufE-like protein 1, chloroplastic/mitochondrial(LOC100779254) coding protein psRNATarget
XM_003549877.3
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  ||||||*||||||||*||||
targets:710   CACAAUCAUCAUCAUCAUCA   729

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor ERF039 (LOC100812293), mRNA ethylene-responsive transcription factor ERF039(LOC100812293) coding protein psRNATarget
XM_003550946.3
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  =*|||||||||||||*||||
targets:365   UCCAAUAAUCAUCAUCAUCA   384

2.5 PREDICTED: Glycine max probable cadmium/zinc-transporting ATPase HMA1, chloroplastic (LOC100776309), mRNA probable cadmium/zinc-transporting ATPase HMA1, chloroplastic(LOC100776309) coding protein psRNATarget
XM_006600905.2
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  ||=*||*|||||||||||||
targets:139   CAUCAUCAUCAUCAUUAUCA   158

3.0 PREDICTED: Glycine max transcription factor HEC2-like (LOC100812308), mRNA transcription factor HEC2-like(LOC100812308) coding protein psRNATarget
XM_003525683.3
ncRNA:20   GUGUUAUUAGUAGUAAUAGU   1
  ||=*||*|||||||||||||
targets:278   CAUCAUCAUCAUCAUUAUCA   297

3.0 PREDICTED: Glycine max ethylene-responsive transcription factor ERF026 (LOC100793589), mRNA ethylene-responsive transcription factor ERF026(LOC100793589) coding protein psRNATarget
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