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BaseInfo

ncRNA ID	novel_gma_miR3180
Species	Glycine max
Class	miRNA
Genome position	Chr18:18231706-18231880 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1294485;SRR1295518
Length	24
Mature sequence(if miRNA)	1 - AACCACCACCAUGAUCGUCAAUCG - 24
Stem-loop(if miRNA)	--      C     G     CA         ACCA    CAC   CG  AU           ----    --         U  C     CA   AACCAC ACCAU AUCGU  AUCGAUGUC    UGAC   CGU  UC  CACCAACAUGA    CUUU  UAUUGUCAU AC ACCAU  C   |||||| ||||| |||||  |||||||||    ||||   |||  ||  |||||||||||    ||||  ||||||||| || |||||  C   UUGGUG UGGUG UGGCA  UAGCUGCAG    AUUG   GUA  AG  GUGGUUGUACU    GAAA  AUGGCAGUG UG UGGUA  A UA      A     G     -C         ---C    AUA   AU  CG           AGUG    CG         C  U     CU
Stem-loop sequence	AACCACCACCAUGAUCGUCAAUCGAUGUCACCAUGACCACCGUCGUCAUCACCAACAUGACUUUUAUUGUCAUUACCACCAUCACCAUCAUGGUUGUCGUGACGGUAGCAAAGGUGAUCAUGUUGGUGGCGAUAAUGAUAGUUACGACGUCGAUCACGGUGGUGGUAGUGGUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006603495.1	ncRNA:24   GCUA------ACUGCUAGUACCACCACCAA   1   =|=|------|||||||*|||||||||||| targets:122   UGGUGGAGUGUGACGAUGAUGGUGGUGGUU   151 Target Full Sequence	1.5	PREDICTED: Glycine max eggshell protein-like (LOC102661414), mRNA	eggshell protein-like(LOC102661414)	coding protein	psRNATarget
XM_006605080.1	ncRNA:24   GCUA-----ACUGCUAGUACCACCACCAA   1   ||||-----|||||||*|||||||||||* targets:135   CGAUGACAGUGACGAUAAUGGUGGUGGUG   163 Target Full Sequence	2.5	PREDICTED: Glycine max keratin, type II cytoskeletal 1-like (LOC102663044), mRNA	keratin, type II cytoskeletal 1-like(LOC102663044)	coding protein	psRNATarget
XM_006598318.1	ncRNA:24   GCUAACUGCUAGUACCACCACCAA   1   **=||||=|||*|||||||||||| targets:49   GUGUUGAUGAUGAUGGUGGUGGUU   72 Target Full Sequence	2.5	PREDICTED: Glycine max glycine-rich cell wall structural protein 1.0-like (LOC102666261), mRNA	glycine-rich cell wall structural protein 1.0-like(LOC102666261)	coding protein	psRNATarget
XM_006603496.1	ncRNA:24   GCUA-----ACUGCUAGUACCACCACCAA   1   =|||-----||||||**|||||||||||| targets:99   UGAUGGCUAUGACGAAGAUGGUGGUGGUU   127 Target Full Sequence	2.5	PREDICTED: Glycine max eggshell protein 1-like (LOC102661540), mRNA	eggshell protein 1-like(LOC102661540)	coding protein	psRNATarget
XM_014774123.1	ncRNA:24   GCUAACUGCUAGUACCACCACCAA   1   |||*-||||||*|||||||||||* targets:378   CGAG-GACGAUGAUGGUGGUGGUG   400 Target Full Sequence	2.5	PREDICTED: Glycine max loricrin-like (LOC106798160), mRNA	loricrin-like(LOC106798160)	coding protein	psRNATarget
XM_003529857.3	ncRNA:24   GCUAACUGCUAGUACCACCACCAA   1   =***||==|||||||||||||||* targets:700   UCUGUGGUGAUCAUGGUGGUGGUG   723 Target Full Sequence	3.0	PREDICTED: Glycine max tyrosine decarboxylase 1-like (LOC100802993), mRNA	tyrosine decarboxylase 1-like(LOC100802993)	coding protein	psRNATarget
XM_014761724.1	ncRNA:24   GCUA-----ACUGCUAGUACCACCACCAA   1   ||||-----||=*||*||||||||||||| targets:597   CGAUGCAGGUGGAGAACAUGGUGGUGGUU   625 Target Full Sequence	3.0	PREDICTED: Glycine max glycine-rich cell wall structural protein 1.8-like (LOC102670230), mRNA	glycine-rich cell wall structural protein 1.8-like(LOC102670230)	coding protein	psRNATarget