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BaseInfo

ncRNA ID novel_gma_miR3179
Species Glycine max
Class miRNA
Genome position Chr3:13355152-13355234 [-]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 21
Mature sequence(if miRNA) 63 - GCCUUUUAUAUAUAUAUAUAU - 83
Stem-loop(if miRNA) -----GCCUUU                               A
           UAUAUAUAUAUAUAUAUAUAUAUAUAUAUAU U
           |||||||||||||||||||||||||||||||
           AUAUAUAUAUAUAUAUAUAUAUAUAUAUAUA A
GGUUUAAACUU                               U
Stem-loop sequence GCCUUUUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUUCAAAUUUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006599235.2
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  *||||||||||||||||||||
targets:2370   CUAUAUAUAUAUAUAAAAGGC   2390

0.0 PREDICTED: Glycine max L-type lectin-domain containing receptor kinase IX.1-like (LOC100784490), mRNA L-type lectin-domain containing receptor kinase IX.1-like(LOC100784490) coding protein psRNATarget
XM_006585434.2
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  ||||||||||||||||||||=
targets:8   AUAUAUAUAUAUAUAAAAGGU   28

1.0 PREDICTED: Glycine max serine/threonine-protein kinase SRK2A-like (LOC100812259), transcript variant X2, mRNA serine/threonine-protein kinase SRK2A-like(LOC100812259) coding protein psRNATarget
XM_003531411.3
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  ||||||||||||||||||||*
targets:1132   AUAUAUAUAUAUAUAAAAGGA   1152

1.0 PREDICTED: Glycine max ATP-dependent zinc metalloprotease FtsH 2-like (LOC100783574), mRNA ATP-dependent zinc metalloprotease FtsH 2-like(LOC100783574) coding protein psRNATarget
XM_003538755.3
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  |||||||||||||||*|||||
targets:56   AUAUAUAUAUAUAUAUAAGGC   76

1.5 PREDICTED: Glycine max uncharacterized LOC100805584 (LOC100805584), transcript variant X1, mRNA uncharacterized LOC100805584(LOC100805584) coding protein psRNATarget
XM_006590582.2
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  |||||||||||||||*|||||
targets:23   AUAUAUAUAUAUAUAUAAGGC   43

1.5 PREDICTED: Glycine max uncharacterized LOC100805584 (LOC100805584), transcript variant X2, mRNA uncharacterized LOC100805584(LOC100805584) coding protein psRNATarget
XM_006578015.2
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  =*||||||||||||||||*||
targets:183   GAAUAUAUAUAUAUAAAAAGC   203

1.5 PREDICTED: Glycine max putative GATA transcription factor 22 (LOC102659929), mRNA putative GATA transcription factor 22(LOC102659929) coding protein psRNATarget
XM_003520725.3
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  ||||||||||||||||=|||=
targets:780   AUAUAUAUAUAUAUAAGAGGU   800

2.5 PREDICTED: Glycine max protein FAM192A (LOC100803069), mRNA protein FAM192A(LOC100803069) coding protein psRNATarget
XM_006577608.2
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  |||||||||||||||||||**
targets:2619   AUAUAUAUAUAUAUAAAAGAA   2639

2.5 PREDICTED: Glycine max disease resistance protein RGA2-like (LOC102669771), mRNA disease resistance protein RGA2-like(LOC102669771) coding protein psRNATarget
XM_003551750.3
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  |||||||||||||||||||**
targets:297   AUAUAUAUAUAUAUAAAAGUG   317

2.5 PREDICTED: Glycine max transcription factor CYCLOIDEA (LOC100786452), mRNA transcription factor CYCLOIDEA(LOC100786452) coding protein psRNATarget
XM_003553953.3
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  |||||||||||||||||||**
targets:1435   AUAUAUAUAUAUAUAAAAGCA   1455

2.5 PREDICTED: Glycine max NAC domain-containing protein 100-like (LOC100784372), mRNA NAC domain-containing protein 100-like(LOC100784372) coding protein psRNATarget
XM_006578672.2
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  |||||||||||||||||||*=
targets:893   AUAUAUAUAUAUAUAAAAGAU   913

2.5 PREDICTED: Glycine max uncharacterized LOC102663110 (LOC102663110), transcript variant X1, mRNA uncharacterized LOC102663110(LOC102663110) coding protein psRNATarget
AK244052.1
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  |||||||||||||||||||*=
targets:1354   AUAUAUAUAUAUAUAAAAGAU   1374

2.5 Glycine max cDNA, clone: GMFL01-01-P12 NA coding protein psRNATarget
XM_003528712.3
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  |||||||||||||||||||*=
targets:1367   AUAUAUAUAUAUAUAAAAGAU   1387

2.5 PREDICTED: Glycine max anthranilate N-methyltransferase (LOC100789402), mRNA anthranilate N-methyltransferase(LOC100789402) coding protein psRNATarget
XM_003552810.3
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  |||||||||||||||||||*=
targets:1003   AUAUAUAUAUAUAUAAAAGUU   1023

2.5 PREDICTED: Glycine max uncharacterized LOC100797772 (LOC100797772), mRNA uncharacterized LOC100797772(LOC100797772) coding protein psRNATarget
XM_003522702.3
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  |||||||||||||||||||**
targets:1134   AUAUAUAUAUAUAUAAAAGAA   1154

2.5 PREDICTED: Glycine max uncharacterized LOC100789170 (LOC100789170), mRNA uncharacterized LOC100789170(LOC100789170) coding protein psRNATarget
XM_003553227.3
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  |||||||||||||||||*||=
targets:1356   AUAUAUAUAUAUAUAAAUGGU   1376

2.5 PREDICTED: Glycine max GDSL esterase/lipase At5g33370 (LOC100812154), mRNA GDSL esterase/lipase At5g33370(LOC100812154) coding protein psRNATarget
AK285348.1
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  |||||||||||||||||*||=
targets:1347   AUAUAUAUAUAUAUAAAUGGU   1367

2.5 Glycine max cDNA, clone: GMFL01-07-O14 NA coding protein psRNATarget
XM_003516776.3
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  |||||||||||||||*||||*
targets:1733   AUAUAUAUAUAUAUAUAAGGA   1753

2.5 PREDICTED: Glycine max caffeoylshikimate esterase-like (LOC100807463), transcript variant X1, mRNA caffeoylshikimate esterase-like(LOC100807463) coding protein psRNATarget
XM_003523880.3
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  |||||||||||||||*||||*
targets:1782   AUAUAUAUAUAUAUAUAAGGA   1802

2.5 PREDICTED: Glycine max uncharacterized LOC100810756 (LOC100810756), transcript variant X1, mRNA uncharacterized LOC100810756(LOC100810756) coding protein psRNATarget
XM_014774656.1
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  |||||||||||||||*||||*
targets:1763   AUAUAUAUAUAUAUAUAAGGA   1783

2.5 PREDICTED: Glycine max uncharacterized LOC100810756 (LOC100810756), transcript variant X2, mRNA uncharacterized LOC100810756(LOC100810756) coding protein psRNATarget
XM_014774056.1
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  |||||||||||||||*||||*
targets:1598   AUAUAUAUAUAUAUAUAAGGA   1618

2.5 PREDICTED: Glycine max caffeoylshikimate esterase-like (LOC100807463), transcript variant X2, mRNA caffeoylshikimate esterase-like(LOC100807463) coding protein psRNATarget
XM_003545841.3
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  |||||||||||||||*||||*
targets:545   AUAUAUAUAUAUAUAUAAGGA   565

2.5 PREDICTED: Glycine max uncharacterized LOC100809033 (LOC100809033), mRNA uncharacterized LOC100809033(LOC100809033) coding protein psRNATarget
XM_006589281.2
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  =||||||||||||||*||||=
targets:767   GUAUAUAUAUAUAUAUAAGGU   787

2.5 PREDICTED: Glycine max putative RING-H2 finger protein ATL71 (LOC102662837), mRNA putative RING-H2 finger protein ATL71(LOC102662837) coding protein psRNATarget
XM_003535717.3
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  =||||||||||||||*||||*
targets:1808   GUAUAUAUAUAUAUAUAAGGA   1828

2.5 PREDICTED: Glycine max sugar transport protein 10-like (LOC100807308), mRNA sugar transport protein 10-like(LOC100807308) coding protein psRNATarget
XM_003552669.3
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  *|||||||||||||||||*|=
targets:408   UUAUAUAUAUAUAUAAAAUGU   428

2.5 PREDICTED: Glycine max non-specific lipid-transfer protein 2 (LOC100306479), mRNA non-specific lipid-transfer protein 2(LOC100306479) coding protein psRNATarget
AK285402.1
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  *|||||||||||||||||*|=
targets:388   UUAUAUAUAUAUAUAAAAUGU   408

2.5 Glycine max cDNA, clone: GMFL01-08-N15 NA coding protein psRNATarget
BT090611.1
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  *|||||||||||||||||*|=
targets:392   UUAUAUAUAUAUAUAAAAUGU   412

2.5 Soybean clone JCVI-FLGm-4N6 unknown mRNA NA coding protein psRNATarget
XM_003533320.3
ncRNA:21   UAUAUAUAUAUAUAUUUUCCG   1
  *|||||||||||||||||*|*
targets:386   UUAUAUAUAUAUAUAAAAAGA   406

2.5 PREDICTED: Glycine max probable histone-arginine methyltransferase 1.3 (LOC100809620), mRNA probable histone-arginine methyltransferase 1.3(LOC100809620) coding protein psRNATarget
XM_003553762.3
ncRNA:21   UAUAUAUAUAUAUAUUUUC-CG   1
  =||||||||||||||||||-||
targets:38   GUAUAUAUAUAUAUAAAAGUGC   59

3.0 PREDICTED: Glycine max potassium transporter 5 (LOC100814313), mRNA potassium transporter 5(LOC100814313) coding protein psRNATarget
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