Search result

BaseInfo

ncRNA ID novel_gma_miR3176
Species Glycine max
Class miRNA
Genome position Chr3:42239105-42239189 [-]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 20
Mature sequence(if miRNA) 1 - CUUCCUCUUUUUGUUUUUUU - 20
Stem-loop(if miRNA) --          U  AC      ---AUAA      -----   UA
  GAAAAUAAAA GA  AAGUUG       CGCUUU     CCA  A
  |||||||||| ||  ||||||       ||||||     |||  A
  UUUUUGUUUU CU  UUCGAC       GUGAAA     GGU  C
UU          U  CC      GUAACUA      UUAAU   UA
Stem-loop sequence GAAAAUAAAAUGAACAAGUUGAUAACGCUUUCCAUAAACAUUGGUAAUUAAAGUGAUCAAUGCAGCUUCCUCUUUUUGUUUUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003547764.3
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  *|||=|||||||||||||||
targets:1183   UAAAGAACAAAAAGAGGAAG   1202

1.0 PREDICTED: Glycine max protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 (LOC100820093), transcript variant X3, mRNA protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1(LOC100820093) coding protein psRNATarget
XM_014769169.1
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  *|||=|||||||||||||||
targets:1133   UAAAGAACAAAAAGAGGAAG   1152

1.0 PREDICTED: Glycine max protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 (LOC100820093), transcript variant X4, mRNA protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1(LOC100820093) coding protein psRNATarget
XM_003547763.3
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  *|||=|||||||||||||||
targets:1125   UAAAGAACAAAAAGAGGAAG   1144

1.0 PREDICTED: Glycine max protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 (LOC100820093), transcript variant X2, mRNA protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1(LOC100820093) coding protein psRNATarget
XM_014769168.1
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  *|||=|||||||||||||||
targets:1077   UAAAGAACAAAAAGAGGAAG   1096

1.0 PREDICTED: Glycine max protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 (LOC100820093), transcript variant X1, mRNA protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1(LOC100820093) coding protein psRNATarget
AK286710.1
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  *|||=|||||||||||||||
targets:1099   UAAAGAACAAAAAGAGGAAG   1118

1.0 Glycine max cDNA, clone: GMFL01-34-P17 NA coding protein psRNATarget
XM_003552676.3
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  |||||||*||||||||||||
targets:101   AAAAAAAAAAAAAGAGGAAG   120

1.5 PREDICTED: Glycine max mannose-6-phosphate isomerase 1 (LOC100805195), mRNA mannose-6-phosphate isomerase 1(LOC100805195) coding protein psRNATarget
XM_006572960.2
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  |||||||*||||||||||||
targets:1178   AAAAAAAAAAAAAGAGGAAG   1197

1.5 PREDICTED: Glycine max flavonol synthase/flavanone 3-hydroxylase (LOC100802501), mRNA flavonol synthase/flavanone 3-hydroxylase(LOC100802501) coding protein psRNATarget
XM_003535951.3
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  |||||||||||||||*||||
targets:237   AAAAAAACAAAAAGAAGAAG   256

1.5 PREDICTED: Glycine max uncharacterized LOC100806979 (LOC100806979), mRNA uncharacterized LOC100806979(LOC100806979) coding protein psRNATarget
XM_014763969.1
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  |=||||=|||||||||||||
targets:510   AGAAAAGCAAAAAGAGGAAG   529

2.0 PREDICTED: Glycine max anaphase-promoting complex subunit 8-like (LOC100811428), transcript variant X1, mRNA anaphase-promoting complex subunit 8-like(LOC100811428) coding protein psRNATarget
XM_003516419.3
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  *||=||||||=|||||||||
targets:181   CAAGAAACAAGAAGAGGAAG   200

2.5 PREDICTED: Glycine max uncharacterized LOC100790847 (LOC100790847), mRNA uncharacterized LOC100790847(LOC100790847) coding protein psRNATarget
XM_006576900.2
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  =||||||||=|||||||||*
targets:1456   GAAAAAACAGAAAGAGGAAA   1475

2.5 PREDICTED: Glycine max auxin-responsive protein IAA11-like (LOC100789143), transcript variant X1, mRNA auxin-responsive protein IAA11-like(LOC100789143) coding protein psRNATarget
XM_006576901.2
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  =||||||||=|||||||||*
targets:1452   GAAAAAACAGAAAGAGGAAA   1471

2.5 PREDICTED: Glycine max auxin-responsive protein IAA11-like (LOC100789143), transcript variant X2, mRNA auxin-responsive protein IAA11-like(LOC100789143) coding protein psRNATarget
XM_006576902.2
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  =||||||||=|||||||||*
targets:1419   GAAAAAACAGAAAGAGGAAA   1438

2.5 PREDICTED: Glycine max auxin-responsive protein IAA11-like (LOC100789143), transcript variant X3, mRNA auxin-responsive protein IAA11-like(LOC100789143) coding protein psRNATarget
XM_003520566.3
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  =||||||||=|||||||||*
targets:1415   GAAAAAACAGAAAGAGGAAA   1434

2.5 PREDICTED: Glycine max auxin-responsive protein IAA11-like (LOC100789143), transcript variant X4, mRNA auxin-responsive protein IAA11-like(LOC100789143) coding protein psRNATarget
XM_003529517.3
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  |=||||||||*|||||||||
targets:99   AGAAAAACAACAAGAGGAAG   118

2.5 PREDICTED: Glycine max FBD-associated F-box protein At1g66320-like (LOC100779795), mRNA FBD-associated F-box protein At1g66320-like(LOC100779795) coding protein psRNATarget
XM_014772940.1
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  ||||=||||*||||||||||
targets:448   AAAAGAACAUAAAGAGGAAG   467

2.5 PREDICTED: Glycine max nuclear transcription factor Y subunit beta-like (LOC100820321), mRNA nuclear transcription factor Y subunit beta-like(LOC100820321) coding protein psRNATarget
XM_003549476.3
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  |||||||*|||||||||||*
targets:45   AAAAAAAGAAAAAGAGGAAA   64

2.5 PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At2g23950 (LOC100775565), mRNA probable LRR receptor-like serine/threonine-protein kinase At2g23950(LOC100775565) coding protein psRNATarget
XM_003533838.3
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  |||||||*|||||||||||*
targets:15   AAAAAAAAAAAAAGAGGAAA   34

2.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 6 (LOC100806762), mRNA CBL-interacting serine/threonine-protein kinase 6(LOC100806762) coding protein psRNATarget
XM_003523022.3
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  |||||||*|||||||||||*
targets:610   AAAAAAAAAAAAAGAGGAAU   629

2.5 PREDICTED: Glycine max uncharacterized LOC100787218 (LOC100787218), mRNA uncharacterized LOC100787218(LOC100787218) coding protein psRNATarget
XM_003533636.3
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  =||=||||||*|||||||||
targets:725   GAAGAAACAACAAGAGGAAG   744

2.5 PREDICTED: Glycine max choline-phosphate cytidylyltransferase 1-like (LOC100786249), mRNA choline-phosphate cytidylyltransferase 1-like(LOC100786249) coding protein psRNATarget
XM_006586002.2
ncRNA:20   UUUU-UUUGUUUUUCUCCUUC   1
  ||=|-||||||||||||||||
targets:1211   AAGAUAAACAAAAAGAGGAAG   1231

3.0 PREDICTED: Glycine max uncharacterized LOC102665055 (LOC102665055), transcript variant X1, mRNA uncharacterized LOC102665055(LOC102665055) coding protein psRNATarget
XM_006586003.2
ncRNA:20   UUUU-UUUGUUUUUCUCCUUC   1
  ||=|-||||||||||||||||
targets:1212   AAGAUAAACAAAAAGAGGAAG   1232

3.0 PREDICTED: Glycine max uncharacterized LOC102665055 (LOC102665055), transcript variant X2, mRNA uncharacterized LOC102665055(LOC102665055) coding protein psRNATarget
XM_006584428.2
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  =|==|||||||||||||||*
targets:265   GAGGAAACAAAAAGAGGAAA   284

3.0 PREDICTED: Glycine max uncharacterized LOC100306293 (LOC100306293), transcript variant X1, mRNA uncharacterized LOC100306293(LOC100306293) coding protein psRNATarget
BT090332.1
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  =|==|||||||||||||||*
targets:95   GAGGAAACAAAAAGAGGAAA   114

3.0 Soybean clone JCVI-FLGm-4A2 unknown mRNA NA coding protein psRNATarget
NM_001249655.2
ncRNA:20   UUUUUUUGUUUUUCUCCUUC   1
  =|==|||||||||||||||*
targets:93   GAGGAAACAAAAAGAGGAAA   112

3.0 Glycine max uncharacterized LOC100306293 (LOC100306293), mRNA uncharacterized LOC100306293(LOC100306293) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.