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BaseInfo

ncRNA ID novel_gma_miR3168
Species Glycine max
Class miRNA
Genome position Chr2:21656194-21656292 [-]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 20
Mature sequence(if miRNA) 80 - UUGUAUGUUCAUUUUUUAUU - 99
Stem-loop(if miRNA) --     UG   A           ----------UUUUC       -  --C  CU
  UUGUA  UUC UUUUUUAUUUA               AUUUACA UG   UC  C
  |||||  ||| |||||||||||               ||||||| ||   ||
  GACGU  AAG AAGAGAUGGGU               UAAAUGU AC   AG  A
CA     UA   A           UUUUUAAUAUUUAUU       C  UAU  AA
Stem-loop sequence UUGUAUGUUCAUUUUUUAUUUAUUUUCAUUUACAUGCUCCUCAAAGAUAUCACUGUAAAUUUAUUUAUAAUUUUUUGGGUAGAGAAAGAAAUUGCAGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003518195.2
ncRNA:20   UUAUUUUUUACUUGUAUGUU   1
  ||||||||||||||||=||*
targets:326   AAUAAAAAAUGAACAUGCAU   345

2.5 PREDICTED: Glycine max RING-H2 finger protein ATL34-like (LOC100807292), mRNA RING-H2 finger protein ATL34-like(LOC100807292) coding protein psRNATarget
XM_006592099.2
ncRNA:20   UUAUUUUUUACUUGUAUGUU   1
  |||*|||||||||*||||||
targets:1807   AAUUAAAAAUGAAGAUACAA   1826

2.5 PREDICTED: Glycine max cyanogenic beta-glucosidase-like (LOC106794108), mRNA cyanogenic beta-glucosidase-like(LOC106794108) coding protein psRNATarget