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BaseInfo

ncRNA ID	novel_gma_miR3165
Species	Glycine max
Class	miRNA
Genome position	Chr2:44801550-44801708 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451670
Length	20
Mature sequence(if miRNA)	1 - UUUGUGAAAAAAAAAAACUG - 20
Stem-loop(if miRNA)	--U      A    UG  UAUCACCAUA         C          UA G   A    CACAACAGAAACCAAUUGU    UUUUUU UUUU  CG          CGAUAGAAA UAAUUUCUAU  U UAA GAUA                   U    |||||| ||||  ||          ||||||||| ||||||||||  | ||| ||||                   G    AAAAAA AAAA  GU          GCUAUUUUU AUUAAAGAUA  A AUU AUUU                   U GUC      A    GU  UUUUAUGAAA         A          GC G   U    UAGAACAAAUACUAUGAGU
Stem-loop sequence	UUUUUUUAUUUUUGCGUAUCACCAUACGAUAGAAACUAAUUUCUAUUAUGUAAAGAUACACAACAGAAACCAAUUGUUGUUGAGUAUCAUAAACAAGAUUUUAUUUAGACGAUAGAAAUUAAUUUUUAUCGAAAGUAUUUUUGUGAAAAAAAAAAACUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT098485.1	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   =|||||||||||||=||||| targets:131   UAGUUUUUUUUUUUUACAAA   150 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-12D21 unknown mRNA	NA	coding protein	psRNATarget
XM_006594717.2	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   =||||||*|||||||||||| targets:2443   UAGUUUUAUUUUUUCACAAA   2462 Target Full Sequence	1.5	PREDICTED: Glycine max choline transporter-like protein 2 (LOC100779959), mRNA	choline transporter-like protein 2(LOC100779959)	coding protein	psRNATarget
BT099381.1	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   *|||||||||||||||*||| targets:433   AAGUUUUUUUUUUUCAAAAA   452 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-23J8 unknown mRNA	NA	coding protein	psRNATarget
AK245786.1	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   =*|||||||||||||||||= targets:171   UCGUUUUUUUUUUUCACAAG   190 Target Full Sequence	2.0	Glycine max cDNA, clone: GMFL01-41-H04	NA	coding protein	psRNATarget
BT099022.1	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   =**||||||||||||||||| targets:6   UUUUUUUUUUUUUUCACAAA   25 Target Full Sequence	2.0	Soybean clone JCVI-FLGm-23F13 unknown mRNA	NA	coding protein	psRNATarget
BT095194.1	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   =**||||||||||||||||| targets:1   UUUUUUUUUUUUUUCACAAA   20 Target Full Sequence	2.0	Soybean clone JCVI-FLGm-6N12 unknown mRNA	NA	coding protein	psRNATarget
BT094679.1	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   =**||||||||||||||||| targets:1   UUUUUUUUUUUUUUCACAAA   20 Target Full Sequence	2.0	Soybean clone JCVI-FLGm-5P18 unknown mRNA	NA	coding protein	psRNATarget
BT095053.1	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   =**||||||||||||||||| targets:4   UUUUUUUUUUUUUUCACAAA   23 Target Full Sequence	2.0	Soybean clone JCVI-FLGm-6L7 unknown mRNA	NA	coding protein	psRNATarget
XM_003518677.3	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   ||*|||||||||||||=||| targets:278   CAAUUUUUUUUUUUCAUAAA   297 Target Full Sequence	2.5	PREDICTED: Glycine max probable methyltransferase PMT2 (LOC100778611), mRNA	probable methyltransferase PMT2(LOC100778611)	coding protein	psRNATarget
AK286198.1	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   ||*|||||||||||||=||| targets:279   CAAUUUUUUUUUUUCAUAAA   298 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-23-L18	NA	coding protein	psRNATarget
XM_003529948.3	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   |||*||||||||||||=||| targets:903   CAGGUUUUUUUUUUCAUAAA   922 Target Full Sequence	2.5	PREDICTED: Glycine max heat stress transcription factor C-1-like (LOC100820260), partial mRNA	heat stress transcription factor C-1-like(LOC100820260)	coding protein	psRNATarget
BT091918.1	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   *|||||||||||||||||=* targets:133   AAGUUUUUUUUUUUCACAGU   152 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-9I23 unknown mRNA	NA	coding protein	psRNATarget
NM_001251803.2	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   *|||||||||||||||||=* targets:129   AAGUUUUUUUUUUUCACAGU   148 Target Full Sequence	2.5	Glycine max uncharacterized LOC100527102 (LOC100527102), mRNA	uncharacterized LOC100527102(LOC100527102)	coding protein	psRNATarget
XM_003529199.3	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   =|*|||||||||||=||||| targets:82   UACUUUUUUUUUUUUACAAA   101 Target Full Sequence	2.5	PREDICTED: Glycine max armadillo repeat-containing protein 6 (LOC100527792), transcript variant X1, mRNA	armadillo repeat-containing protein 6(LOC100527792)	coding protein	psRNATarget
XM_014778092.1	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   =|*|||||||||||=||||| targets:82   UACUUUUUUUUUUUUACAAA   101 Target Full Sequence	2.5	PREDICTED: Glycine max armadillo repeat-containing protein 6 (LOC100527792), transcript variant X2, mRNA	armadillo repeat-containing protein 6(LOC100527792)	coding protein	psRNATarget
XM_014774353.1	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   ||||*|||||||||*||||| targets:4049   CAGUAUUUUUUUUUAACAAA   4068 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100801318 (LOC100801318), transcript variant X3, mRNA	uncharacterized LOC100801318(LOC100801318)	coding protein	psRNATarget
XM_006577762.2	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   ||||*|||||||||*||||| targets:4039   CAGUAUUUUUUUUUAACAAA   4058 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100801318 (LOC100801318), transcript variant X1, mRNA	uncharacterized LOC100801318(LOC100801318)	coding protein	psRNATarget
XM_006577767.2	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   ||||*|||||||||*||||| targets:3948   CAGUAUUUUUUUUUAACAAA   3967 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100801318 (LOC100801318), transcript variant X12, mRNA	uncharacterized LOC100801318(LOC100801318)	coding protein	psRNATarget
XM_006577770.2	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   ||||*|||||||||*||||| targets:3947   CAGUAUUUUUUUUUAACAAA   3966 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100801318 (LOC100801318), transcript variant X19, mRNA	uncharacterized LOC100801318(LOC100801318)	coding protein	psRNATarget
XM_006577769.2	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   ||||*|||||||||*||||| targets:3930   CAGUAUUUUUUUUUAACAAA   3949 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100801318 (LOC100801318), transcript variant X18, mRNA	uncharacterized LOC100801318(LOC100801318)	coding protein	psRNATarget
XM_006577766.2	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   ||||*|||||||||*||||| targets:3885   CAGUAUUUUUUUUUAACAAA   3904 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100801318 (LOC100801318), transcript variant X11, mRNA	uncharacterized LOC100801318(LOC100801318)	coding protein	psRNATarget
XM_003530634.3	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   ||*|||||||||||*||||| targets:3189   CACUUUUUUUUUUUGACAAA   3208 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100796980 (LOC100796980), mRNA	uncharacterized LOC100796980(LOC100796980)	coding protein	psRNATarget
XM_003532134.3	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   *|||||||||||||*||||* targets:17   AAGUUUUUUUUUUUAACAAU   36 Target Full Sequence	2.5	PREDICTED: Glycine max ER membrane protein complex subunit 3 (LOC100816887), mRNA	ER membrane protein complex subunit 3(LOC100816887)	coding protein	psRNATarget
BT098307.1	ncRNA:20   GUCAAAAAAAAAAAGUGUUU   1   =**||||||||||||||||= targets:4   UUUUUUUUUUUUUUCACAAG   23 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-12E22 unknown mRNA	NA	coding protein	psRNATarget