Search result

BaseInfo

ncRNA ID novel_gma_miR3164
Species Glycine max
Class miRNA
Genome position Chr2:45386497-45386562 [-]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 20
Mature sequence(if miRNA) 1 - UUCUGUUUAUUUUCUAUCUG - 20
Stem-loop(if miRNA) --    -          C  AG    --     G
  GAUA AAAAUAAAUA AA  CACU  UGUAU A
  |||| |||||||||| ||  ||||  ||||| G
  CUAU UUUUAUUUGU UU  GUGG  GCAUA A
GU    C          C  CU    UU     A
Stem-loop sequence GAUAAAAAUAAAUACAAAGCACUUGUAUGAGAAAUACGUUGGUGUCUUCUGUUUAUUUUCUAUCUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006585789.2
ncRNA:20   GUCUAUCUUUUAUUUGUCUU   1
  *|||*|||=|||||||||||
targets:72   GAGAGAGAGAAUAAACAGAA   91

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor ERF118 (LOC102667919), transcript variant X2, mRNA ethylene-responsive transcription factor ERF118(LOC102667919) coding protein psRNATarget
XM_006585788.2
ncRNA:20   GUCUAUCUUUUAUUUGUCUU   1
  *|||*|||=|||||||||||
targets:72   GAGAGAGAGAAUAAACAGAA   91

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor ERF118 (LOC102667919), transcript variant X1, mRNA ethylene-responsive transcription factor ERF118(LOC102667919) coding protein psRNATarget
XM_003523374.3
ncRNA:20   GUCUAUCUUUUAUUUGUCUU   1
  =|||*||||||||||*||||
targets:44   UAGAAAGAAAAUAAAGAGAA   63

2.5 PREDICTED: Glycine max floral homeotic protein PMADS 2-like (LOC100795861), mRNA floral homeotic protein PMADS 2-like(LOC100795861) coding protein psRNATarget