Search result

BaseInfo

ncRNA ID novel_gma_miR3158
Species Glycine max
Class miRNA
Genome position Chr2:15965114-15965234 [+]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 20
Mature sequence(if miRNA) 102 - UUGCUUUCAAAAAAAAAAAA - 121
Stem-loop(if miRNA) --A           --U   C   C      ------      CUUUUU   AUACUUC        CA
   UUUUUUUUUGG   UAA AUA AUAUUG      GUUAGG      GGU       ACAGCUUA  C
   |||||||||||   ||| ||| ||||||      ||||||      |||       ||||||||
   AAAAAAAAACU   GUU UAU UAUAAU      UAAUCU      CCA       UGUCGAAU  A
AAA           UUC   U   -      AUUUUU      -UAUCU   -------        UG
Stem-loop sequence AUUUUUUUUUGGUUAACAUACAUAUUGGUUAGGCUUUUUGGUAUACUUCACAGCUUACACAGUUAAGCUGUACCUCUAUUCUAAUUUUUUAUAAUAUUAUUUUGCUUUCAAAAAAAAAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT098487.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  ||||||||||||||||||||
targets:12   UUUUUUUUUUUUGAAAGCAA   31

0.0 Soybean clone JCVI-FLGm-12F1 unknown mRNA NA coding protein psRNATarget
BT098336.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  |||||||||||||||||=||
targets:7   UUUUUUUUUUUUGAAAGUAA   26

1.5 Soybean clone JCVI-FLGm-26J17 unknown mRNA NA coding protein psRNATarget
XM_014761994.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  ||||||||||||*|||||||
targets:2715   UUUUUUUUUUUUCAAAGCAA   2734

1.5 PREDICTED: Glycine max diphthine methyltransferase homolog (LOC100811574), transcript variant X5, mRNA diphthine methyltransferase homolog(LOC100811574) coding protein psRNATarget
XM_014761995.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  ||||||||||||*|||||||
targets:2391   UUUUUUUUUUUUCAAAGCAA   2410

1.5 PREDICTED: Glycine max diphthine methyltransferase homolog (LOC100811574), transcript variant X6, mRNA diphthine methyltransferase homolog(LOC100811574) coding protein psRNATarget
XM_014761991.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  ||||||||||||*|||||||
targets:2366   UUUUUUUUUUUUCAAAGCAA   2385

1.5 PREDICTED: Glycine max diphthine methyltransferase homolog (LOC100811574), transcript variant X1, mRNA diphthine methyltransferase homolog(LOC100811574) coding protein psRNATarget
XM_014761992.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  ||||||||||||*|||||||
targets:2042   UUUUUUUUUUUUCAAAGCAA   2061

1.5 PREDICTED: Glycine max diphthine methyltransferase homolog (LOC100811574), transcript variant X2, mRNA diphthine methyltransferase homolog(LOC100811574) coding protein psRNATarget
XM_014761993.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  ||||||||||||*|||||||
targets:1056   UUUUUUUUUUUUCAAAGCAA   1075

1.5 PREDICTED: Glycine max diphthine methyltransferase homolog (LOC100811574), transcript variant X4, mRNA diphthine methyltransferase homolog(LOC100811574) coding protein psRNATarget
XM_003536384.3
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  |||||||||||*||||||||
targets:1574   UUUUUUUUUUUGGAAAGCAA   1593

1.5 PREDICTED: Glycine max protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC100814115), mRNA protein ROOT PRIMORDIUM DEFECTIVE 1(LOC100814115) coding protein psRNATarget
XM_014769391.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  |||||||||||*||||||||
targets:6   UUUUUUUUUUUGGAAAGCAA   25

1.5 PREDICTED: Glycine max chaperone protein DnaJ-like (LOC102662575), transcript variant X1, mRNA chaperone protein DnaJ-like(LOC102662575) coding protein psRNATarget
XM_014769392.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  |||||||||||*||||||||
targets:5   UUUUUUUUUUUGGAAAGCAA   24

1.5 PREDICTED: Glycine max chaperone protein DnaJ-like (LOC102662575), transcript variant X2, mRNA chaperone protein DnaJ-like(LOC102662575) coding protein psRNATarget
BT098608.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  ||||||||||||*|||||||
targets:5   UUUUUUUUUUUUUAAAGCAA   24

1.5 Soybean clone JCVI-FLGm-12P19 unknown mRNA NA coding protein psRNATarget
BT098479.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  ||||||||||||||||*|||
targets:10   UUUUUUUUUUUUGAAAACAA   29

1.5 Soybean clone JCVI-FLGm-23M15 unknown mRNA NA coding protein psRNATarget
BT098995.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  ||||||||||||*|||||||
targets:9   UUUUUUUUUUUUCAAAGCAA   28

1.5 Soybean clone JCVI-FLGm-16F12 unknown mRNA NA coding protein psRNATarget
BT094868.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  ||||||||||||*|||||||
targets:36   UUUUUUUUUUUUAAAAGCAA   55

1.5 Soybean clone JCVI-FLGm-19E5 unknown mRNA NA coding protein psRNATarget
BT091077.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  ||||||||||||||||*|||
targets:47   UUUUUUUUUUUUGAAACCAA   66

1.5 Soybean clone JCVI-FLGm-19M1 unknown mRNA NA coding protein psRNATarget
BT091067.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  ||||||||||||||||||*|
targets:46   UUUUUUUUUUUUGAAAGCUA   65

1.5 Soybean clone JCVI-FLGm-6D15 unknown mRNA NA coding protein psRNATarget
XM_003543701.3
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  |||||||||||||||||*|=
targets:4567   UUUUUUUUUUUUGAAAGGAG   4586

2.5 PREDICTED: Glycine max uncharacterized LOC100779077 (LOC100779077), transcript variant X1, mRNA uncharacterized LOC100779077(LOC100779077) coding protein psRNATarget
XM_006593488.2
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  |||||||||||||||||*|=
targets:4558   UUUUUUUUUUUUGAAAGGAG   4577

2.5 PREDICTED: Glycine max uncharacterized LOC100779077 (LOC100779077), transcript variant X2, mRNA uncharacterized LOC100779077(LOC100779077) coding protein psRNATarget
XM_006593489.2
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  |||||||||||||||||*|=
targets:4542   UUUUUUUUUUUUGAAAGGAG   4561

2.5 PREDICTED: Glycine max uncharacterized LOC100779077 (LOC100779077), transcript variant X3, mRNA uncharacterized LOC100779077(LOC100779077) coding protein psRNATarget
XM_003520909.3
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  ||||*||||||||=||||||
targets:1928   UUUUCUUUUUUUGGAAGCAA   1947

2.5 PREDICTED: Glycine max galactose oxidase-like (LOC100776515), mRNA galactose oxidase-like(LOC100776515) coding protein psRNATarget
XM_003526504.3
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  ||||||*||||||=||||||
targets:1506   UUUUUUAUUUUUGGAAGCAA   1525

2.5 PREDICTED: Glycine max protein ECERIFERUM 1-like (LOC100782113), mRNA protein ECERIFERUM 1-like(LOC100782113) coding protein psRNATarget
BT098193.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  ||||||||||||||||*||=
targets:4   UUUUUUUUUUUUGAAAUCAG   23

2.5 Soybean clone JCVI-FLGm-12M9 unknown mRNA NA coding protein psRNATarget
BT098561.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  ||||||||||||||||*||=
targets:25   UUUUUUUUUUUUGAAAACAG   44

2.5 Soybean clone JCVI-FLGm-12L19 unknown mRNA NA coding protein psRNATarget
BT094649.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  ||||||||||||||||*||=
targets:7   UUUUUUUUUUUUGAAAUCAG   26

2.5 Soybean clone JCVI-FLGm-5L18 unknown mRNA NA coding protein psRNATarget
BT098217.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  ||||||||||||||||*||*
targets:25   UUUUUUUUUUUUGAAAACAC   44

2.5 Soybean clone JCVI-FLGm-23A17 unknown mRNA NA coding protein psRNATarget
BT095203.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  |||||||||||||||*|||*
targets:5   UUUUUUUUUUUUGAACGCAC   24

2.5 Soybean clone JCVI-FLGm-6P2 unknown mRNA NA coding protein psRNATarget
BT097942.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  ||||||||||||*||||||*
targets:15   UUUUUUUUUUUUUAAAGCAC   34

2.5 Soybean clone JCVI-FLGm-11J18 unknown mRNA NA coding protein psRNATarget
NM_001254392.2
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  |||||||||||||*|||||*
targets:583   UUUUUUUUUUUUGUAAGCAU   602

2.5 Glycine max uncharacterized LOC100792772 (LOC100792772), mRNA uncharacterized LOC100792772(LOC100792772) coding protein psRNATarget
BT094948.1
ncRNA:20   AAAAAAAAAAAACUUUCGUU   1
  |||||||||||||*|||||*
targets:27   UUUUUUUUUUUUGUAAGCAC   46

2.5 Soybean clone JCVI-FLGm-19I3 unknown mRNA NA coding protein psRNATarget
BT098606.1
ncRNA:20   AAAAAAAAAAAACUUUC-GUU   1
  |||||||||||||||||-|||
targets:7   UUUUUUUUUUUUGAAAGUCAA   27

3.0 Soybean clone JCVI-FLGm-12P15 unknown mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.