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BaseInfo

ncRNA ID	ath-miR778
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr2:17349437-17349574 [-]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	112 - UGGCUUGGUUUAUGUACACCG - 132
Stem-loop(if miRNA)	-         C                    A       ---   C UCCUAUACAGAUUUUGGGACAUG  CCGCCUUGG UUGGUUUAUGUACACCGAGU UGUUCAG   CUC A                       U  ||||||||| |||||||||||||||||||| |||||||   ||| |                       G  GGCGGAACC AACCAGAUACAUGUGGCUCA ACAAGUC   AAA G                       C U         A                    A       AAG   - AUAUAUACUUUGGAGUUGGGAUC
Stem-loop sequence	CCGCCUUGGCUUGGUUUAUGUACACCGAGUAUGUUCAGCUCCAUCCUAUACAGAUUUUGGGACAUGUGCCUAGGGUUGAGGUUUCAUAUAUAGAAAGAACUGAACAAACUCGGUGUACAUAGACCAAACCAAGGCGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT002751.1	ncRNA:21   GCCACAUGUAUUUGGUUCGGU   1   =|||*|||||||||||||||| targets:1050   UGGUAUACAUAAACCAAGCCA   1070 Target Full Sequence	1.0	Arabidopsis thaliana clone C104839 putative mammalian MHC III region protein G9a (At2g22740) mRNA, complete cds	NA	coding protein	psRNATarget
NM_201785.1	ncRNA:21   GCCACAUGUAUUUGGUUCGGU   1   =|||*|||||||||||||||| targets:1175   UGGUAUACAUAAACCAAGCCA   1195 Target Full Sequence	1.0	Arabidopsis thaliana SU(VAR)3-9 homolog 6 (SUVH6), mRNA	SU(VAR)3-9 homolog 6(SUVH6)	coding protein	psRNATarget
AY065374.1	ncRNA:21   GCCACAUGUAUUUGGUUCGGU   1   =|||*|||||||||||||||| targets:1162   UGGUAUACAUAAACCAAGCCA   1182 Target Full Sequence	1.0	Arabidopsis thaliana putative mammalian MHC III region protein G9a (At2g22740) mRNA, complete cds	NA	coding protein	psRNATarget
NM_179699.3	ncRNA:21   GCCACAUGUAUUUGGUUCGGU   1   =|||*|||||||||||||||| targets:1232   UGGUAUACAUAAACCAAGCCA   1252 Target Full Sequence	1.0	Arabidopsis thaliana SU(VAR)3-9 homolog 6 (SUVH6), mRNA	SU(VAR)3-9 homolog 6(SUVH6)	coding protein	psRNATarget

Reference

1	PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006).
2	PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007).