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BaseInfo

ncRNA ID novel_gma_miR3152
Species Glycine max
Class miRNA
Genome position Chr20:29414135-29414239 [-]
Reference genome Glycine_max_v2.0
Source SRR1451670;SRR1451674;SRR1451680
Length 20
Mature sequence(if miRNA) 86 - UUUCUCUCUCUAGGAUUCGA - 105
Stem-loop(if miRNA) --UU     C  -   GA    A AAUGG    -C   CCC     ----U   AAA
    UCUCU UC UAG  UUCG C     UGGC  GCU   UCGCC     CGC   G
    ||||| || |||  |||| |     ||||  |||   |||||     |||   A
    AGAGA AG AUC  GAGC G     GCCG  CGA   AGCGG     GUG   G
UGGU     -  U   AC    A GACGA    CU   ---     UACAU   CAA
Stem-loop sequence UUUCUCUCUCUAGGAUUCGACAAUGGUGGCCGCUCCCUCGCCUCGCAAAGAGAACGUGUACAUGGCGAAGCUCGCCGAGCAGGACGAGCACUAUGAAGAGAUGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003534506.3
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  |||=||=|||||||||||||
targets:267   UCGGAUUCUAGAGAGAGAAA   286

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100805894), transcript variant X1, mRNA ATP-dependent helicase BRM-like(LOC100805894) coding protein psRNATarget
XM_003552354.3
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  *||=||=|||||||||||||
targets:264   GCGGAUUCUAGAGAGAGAAA   283

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100811608), transcript variant X5, mRNA ATP-dependent helicase BRM-like(LOC100811608) coding protein psRNATarget
XM_014770813.1
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  *||=||=|||||||||||||
targets:264   GCGGAUUCUAGAGAGAGAAA   283

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100811608), transcript variant X4, mRNA ATP-dependent helicase BRM-like(LOC100811608) coding protein psRNATarget
XM_006602745.2
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  *||=||=|||||||||||||
targets:264   GCGGAUUCUAGAGAGAGAAA   283

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100811608), transcript variant X2, mRNA ATP-dependent helicase BRM-like(LOC100811608) coding protein psRNATarget
XM_006602746.2
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  *||=||=|||||||||||||
targets:264   GCGGAUUCUAGAGAGAGAAA   283

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100811608), transcript variant X3, mRNA ATP-dependent helicase BRM-like(LOC100811608) coding protein psRNATarget
XM_006602744.2
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  *||=||=|||||||||||||
targets:264   GCGGAUUCUAGAGAGAGAAA   283

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100811608), transcript variant X1, mRNA ATP-dependent helicase BRM-like(LOC100811608) coding protein psRNATarget
XM_006602461.2
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  ||*|||=|||||||||||||
targets:300   UCAAAUUCUAGAGAGAGAAA   319

2.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X10, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_014770822.1
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  ||*|||=|||||||||||||
targets:301   UCAAAUUCUAGAGAGAGAAA   320

2.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X11, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602455.2
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  ||*|||=|||||||||||||
targets:299   UCAAAUUCUAGAGAGAGAAA   318

2.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X2, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_014770820.1
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  ||*|||=|||||||||||||
targets:299   UCAAAUUCUAGAGAGAGAAA   318

2.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X3, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602460.2
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  ||*|||=|||||||||||||
targets:298   UCAAAUUCUAGAGAGAGAAA   317

2.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X9, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602459.2
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  ||*|||=|||||||||||||
targets:299   UCAAAUUCUAGAGAGAGAAA   318

2.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X8, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602458.2
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  ||*|||=|||||||||||||
targets:298   UCAAAUUCUAGAGAGAGAAA   317

2.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X7, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602454.2
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  ||*|||=|||||||||||||
targets:299   UCAAAUUCUAGAGAGAGAAA   318

2.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X1, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_014770821.1
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  ||*|||=|||||||||||||
targets:299   UCAAAUUCUAGAGAGAGAAA   318

2.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X6, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602456.2
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  ||*|||=|||||||||||||
targets:299   UCAAAUUCUAGAGAGAGAAA   318

2.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X4, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602457.2
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  ||*|||=|||||||||||||
targets:299   UCAAAUUCUAGAGAGAGAAA   318

2.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X5, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
BT095308.1
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  *||=*|=|||||||||||||
targets:201   ACGGUUUCUAGAGAGAGAAA   220

3.0 Soybean clone JCVI-FLGm-25I9 unknown mRNA NA coding protein psRNATarget
AK243882.1
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  *||=*|=|||||||||||||
targets:35   ACGGUUUCUAGAGAGAGAAA   54

3.0 Glycine max cDNA, clone: GMFL01-01-I04 NA coding protein psRNATarget
NM_001250953.2
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  *||=*|=|||||||||||||
targets:41   ACGGUUUCUAGAGAGAGAAA   60

3.0 Glycine max mitogen-activated protein kinase 1 (MAPK1), mRNA mitogen-activated protein kinase 1(MAPK1) coding protein psRNATarget
AK244765.1
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  *||=*|=|||||||||||||
targets:42   ACGGUUUCUAGAGAGAGAAA   61

3.0 Glycine max cDNA, clone: GMFL01-13-H17 NA coding protein psRNATarget
XM_003539692.3
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  *||=*|=|||||||||||||
targets:209   ACGGUUUCUAGAGAGAGAAA   228

3.0 PREDICTED: Glycine max mitogen-activated protein kinase 3 (LOC100801339), mRNA mitogen-activated protein kinase 3(LOC100801339) coding protein psRNATarget
XM_014774579.1
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  *|*|||=||||||||||||=
targets:1479   ACAAAUUCUAGAGAGAGAAG   1498

3.0 PREDICTED: Glycine max uncharacterized LOC100805956 (LOC100805956), transcript variant X1, mRNA uncharacterized LOC100805956(LOC100805956) coding protein psRNATarget
XM_003530281.3
ncRNA:20   AGCUUAGGAUCUCUCUCUUU   1
  |=||*|*|||||||||||||
targets:2   UUGAUUACUAGAGAGAGAAA   21

3.0 PREDICTED: Glycine max cinnamoyl-CoA reductase 1 (LOC100784817), mRNA cinnamoyl-CoA reductase 1(LOC100784817) coding protein psRNATarget
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