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BaseInfo

ncRNA ID novel_gma_miR3150
Species Glycine max
Class miRNA
Genome position Chr20:46995222-46995260 [-]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 19
Mature sequence(if miRNA) 1 - AAUCAUGUAAUAAUUUCUC - 19
Stem-loop(if miRNA) --CUAAUG          C
        AUUACAUGGU A
        |||||||||| U
        UAAUGUACUA G
CUCUUUAA          A
Stem-loop sequence CUAAUGAUUACAUGGUCAUGAAUCAUGUAAUAAUUUCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003516782.3
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  |||||||||||||||||||
targets:1086   GAGAAAUUAUUACAUGAUU   1104

0.0 PREDICTED: Glycine max DNA-3-methyladenine glycosylase (LOC100810677), mRNA DNA-3-methyladenine glycosylase(LOC100810677) coding protein psRNATarget
NM_001254418.1
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  ||||||||||||||||||*
targets:546   GAGAAAUUAUUACAUGAUC   564

1.0 Glycine max uncharacterized LOC100808139 (LOC100808139), mRNA uncharacterized LOC100808139(LOC100808139) coding protein psRNATarget
XM_014775434.1
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  ||*||||||||||||||||
targets:2688   GACAAAUUAUUACAUGAUU   2706

1.0 PREDICTED: Glycine max serine/threonine-protein kinase AtPK2/AtPK19-like (LOC100800825), mRNA serine/threonine-protein kinase AtPK2/AtPK19-like(LOC100800825) coding protein psRNATarget
XM_014768590.1
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  ||||||||||||||||=||
targets:437   GAGAAAUUAUUACAUGGUU   455

1.5 PREDICTED: Glycine max protein DETOXIFICATION 2-like (LOC100782350), mRNA protein DETOXIFICATION 2-like(LOC100782350) coding protein psRNATarget
XM_014761846.1
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  ||||||||||||||||=||
targets:3220   GAGAAAUUAUUACAUGGUU   3238

1.5 PREDICTED: Glycine max probable leucine-rich repeat receptor-like protein kinase At5g49770 (LOC100782366), mRNA probable leucine-rich repeat receptor-like protein kinase At5g49770(LOC100782366) coding protein psRNATarget
BT092332.1
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  |||||||*|||||||||||
targets:711   GAGAAAUAAUUACAUGAUU   729

1.5 Soybean clone JCVI-FLGm-10N9 unknown mRNA NA coding protein psRNATarget
NM_001249810.2
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  |||||||*|||||||||||
targets:881   GAGAAAUAAUUACAUGAUU   899

1.5 Glycine max EF-hand, calcium binding motif-containing protein (LOC100527487), mRNA uncharacterized LOC100527487(LOC100527487) coding protein psRNATarget
XM_003551415.3
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  |||||||||||*|||||||
targets:82   GAGAAAUUAUUUCAUGAUU   100

1.5 PREDICTED: Glycine max probable purine permease 9 (LOC100789651), transcript variant X1, mRNA probable purine permease 9(LOC100789651) coding protein psRNATarget
XM_006602076.2
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  |||||||||||*|||||||
targets:101   GAGAAAUUAUUUCAUGAUU   119

1.5 PREDICTED: Glycine max probable purine permease 9 (LOC100789651), transcript variant X2, mRNA probable purine permease 9(LOC100789651) coding protein psRNATarget
XM_014765136.1
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  ||||||||||||*||||||
targets:3015   GAGAAAUUAUUAGAUGAUU   3033

1.5 PREDICTED: Glycine max receptor-like protein kinase (LOC100305430), transcript variant X1, mRNA receptor-like protein kinase(LOC100305430) coding protein psRNATarget
XM_014772955.1
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  *|||||||||||||||||*
targets:510   CAGAAAUUAUUACAUGAUC   528

2.0 PREDICTED: Glycine max heavy metal-associated isoprenylated plant protein 26-like (LOC100779672), transcript variant X2, mRNA heavy metal-associated isoprenylated plant protein 26-like(LOC100779672) coding protein psRNATarget
AK245874.1
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  **|||||||||||||||||
targets:860   CUGAAAUUAUUACAUGAUU   878

2.0 Glycine max cDNA, clone: GMFL01-44-B18 NA coding protein psRNATarget
XM_006595781.2
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  *|*||||||||||||||||
targets:636   AAAAAAUUAUUACAUGAUU   654

2.0 PREDICTED: Glycine max uncharacterized LOC100805825 (LOC100805825), mRNA uncharacterized LOC100805825(LOC100805825) coding protein psRNATarget
XM_006597817.2
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  ||*|||||||||||||||*
targets:1264   GAUAAAUUAUUACAUGAUA   1282

2.0 PREDICTED: Glycine max uncharacterized LOC102665474 (LOC102665474), mRNA uncharacterized LOC102665474(LOC102665474) coding protein psRNATarget
XM_003535971.3
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  ||*|||||||||||||||*
targets:1461   GAUAAAUUAUUACAUGAUA   1479

2.0 PREDICTED: Glycine max rhicadhesin receptor-like (LOC100817475), mRNA rhicadhesin receptor-like(LOC100817475) coding protein psRNATarget
XM_003548623.3
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  ||||*|||||||||||||*
targets:5095   GAGACAUUAUUACAUGAUG   5113

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100807104), mRNA ATP-dependent helicase BRM-like(LOC100807104) coding protein psRNATarget
XM_003528799.3
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  ||||*|||||||||||||*
targets:5088   GAGACAUUAUUACAUGAUG   5106

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100793092), mRNA ATP-dependent helicase BRM-like(LOC100793092) coding protein psRNATarget
XM_006583793.2
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  *|||||||||||||||=||
targets:1877   AAGAAAUUAUUACAUGGUU   1895

2.5 PREDICTED: Glycine max uncharacterized LOC100789398 (LOC100789398), transcript variant X1, mRNA uncharacterized LOC100789398(LOC100789398) coding protein psRNATarget
XM_014778142.1
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  *|||||||||||||||=||
targets:1878   AAGAAAUUAUUACAUGGUU   1896

2.5 PREDICTED: Glycine max uncharacterized LOC100789398 (LOC100789398), transcript variant X2, mRNA uncharacterized LOC100789398(LOC100789398) coding protein psRNATarget
BT097218.1
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  |||||||*||||||||||*
targets:61   GAGAAAUGAUUACAUGAUG   79

2.5 Soybean clone JCVI-FLGm-21B10 unknown mRNA NA coding protein psRNATarget
XM_003538308.2
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  |||||||||||*||||||*
targets:1166   GAGAAAUUAUUUCAUGAUG   1184

2.5 PREDICTED: Glycine max uncharacterized LOC100783305 (LOC100783305), transcript variant X1, mRNA uncharacterized LOC100783305(LOC100783305) coding protein psRNATarget
XM_014763693.1
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  |||||||||||*||||||*
targets:1177   GAGAAAUUAUUUCAUGAUG   1195

2.5 PREDICTED: Glycine max uncharacterized LOC100783305 (LOC100783305), transcript variant X2, mRNA uncharacterized LOC100783305(LOC100783305) coding protein psRNATarget
XM_003522623.3
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  ||||||||||||*|||||*
targets:1831   GAGAAAUUAUUAAAUGAUC   1849

2.5 PREDICTED: Glycine max E3 ubiquitin-protein ligase UPL3-like (LOC100791450), mRNA E3 ubiquitin-protein ligase UPL3-like(LOC100791450) coding protein psRNATarget
NM_001249244.2
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  ||*|||||||*||||||||
targets:672   GAUAAAUUAUCACAUGAUU   690

2.5 Glycine max uncharacterized LOC100306004 (LOC100306004), mRNA uncharacterized LOC100306004(LOC100306004) coding protein psRNATarget
BT089889.1
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  ||*|||||||*||||||||
targets:674   GAUAAAUUAUCACAUGAUU   692

2.5 Soybean clone JCVI-FLGm-3G15 unknown mRNA NA coding protein psRNATarget
XM_006601672.2
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  ||*|||||||*||||||||
targets:693   GAUAAAUUAUCACAUGAUU   711

2.5 PREDICTED: Glycine max uncharacterized LOC100306004 (LOC100306004), transcript variant X1, mRNA uncharacterized LOC100306004(LOC100306004) coding protein psRNATarget
XM_014767264.1
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  |||||*||||*||||||||
targets:495   GAGAAUUUAUAACAUGAUU   513

2.5 PREDICTED: Glycine max uncharacterized LOC100793446 (LOC100793446), transcript variant X3, mRNA uncharacterized LOC100793446(LOC100793446) coding protein psRNATarget
XM_014767262.1
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  |||||*||||*||||||||
targets:493   GAGAAUUUAUAACAUGAUU   511

2.5 PREDICTED: Glycine max uncharacterized LOC100793446 (LOC100793446), transcript variant X1, mRNA uncharacterized LOC100793446(LOC100793446) coding protein psRNATarget
XM_014767266.1
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  |||||*||||*||||||||
targets:492   GAGAAUUUAUAACAUGAUU   510

2.5 PREDICTED: Glycine max uncharacterized LOC100793446 (LOC100793446), transcript variant X7, mRNA uncharacterized LOC100793446(LOC100793446) coding protein psRNATarget
XM_014767265.1
ncRNA:19   CUCUUUAAUAAUGUACUAA   1
  |||||*||||*||||||||
targets:498   GAGAAUUUAUAACAUGAUU   516

2.5 PREDICTED: Glycine max uncharacterized LOC100793446 (LOC100793446), transcript variant X6, mRNA uncharacterized LOC100793446(LOC100793446) coding protein psRNATarget
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