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BaseInfo

ncRNA ID	novel_gma_miR3145
Species	Glycine max
Class	miRNA
Genome position	Chr19:6299600-6299672 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451670
Length	20
Mature sequence(if miRNA)	1 - GAUUUAGAUUUGGAUGUGGA - 20
Stem-loop(if miRNA)	--U G              G GG  A     A   U    G AUUUAGAUUUGGAU U  AU UACCA GUU C    | |||||||||||||| |  || ||||| ||| U    U UAGGUUUAGAUUUA G  UG GUGGU CAA U AGG G              G UU  A     A   A
Stem-loop sequence	UGGAUUUAGAUUUGGAUGUGGAUAUACCAAGUUUCUUAAACAUGGUGAGUUUGGAUUUAGAUUUGGAUGUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014765366.1	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   |||||||||||||||||||| targets:100   UCCACAUCCAAAUCUAAAUC   119 Target Full Sequence	0.0	PREDICTED: Glycine max putative endo-1,3(4)-beta-glucanase 2 (LOC100816319), mRNA	putative endo-1,3(4)-beta-glucanase 2(LOC100816319)	coding protein	psRNATarget
XM_006578343.2	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   *=||*||||||||||||||| targets:274   CUCAAAUCCAAAUCUAAAUC   293 Target Full Sequence	2.0	PREDICTED: Glycine max RING-H2 finger protein ATL52-like (LOC102660020), mRNA	RING-H2 finger protein ATL52-like(LOC102660020)	coding protein	psRNATarget
NM_001253956.1	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:93   UCCAAAUCCAAAUCCAAAUC   112 Target Full Sequence	2.5	Glycine max uncharacterized LOC100820348 (LOC100820348), mRNA	uncharacterized LOC100820348(LOC100820348)	coding protein	psRNATarget
BT096375.1	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:93   UCCAAAUCCAAAUCCAAAUC   112 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-9B18 unknown mRNA	NA	coding protein	psRNATarget
XM_003555993.3	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:19   UCCAAAUCCAAAUCCAAAUC   38 Target Full Sequence	2.5	PREDICTED: Glycine max photosystem I reaction center subunit II, chloroplastic-like (LOC100800992), mRNA	photosystem I reaction center subunit II, chloroplastic-like(LOC100800992)	coding protein	psRNATarget
XM_014771153.1	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:53   UCCAAAUCCAAAUCAAAAUC   72 Target Full Sequence	2.5	PREDICTED: Glycine max reticulon-like protein B8 (LOC100782928), transcript variant X7, mRNA	reticulon-like protein B8(LOC100782928)	coding protein	psRNATarget
XM_014771152.1	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:60   UCCAAAUCCAAAUCAAAAUC   79 Target Full Sequence	2.5	PREDICTED: Glycine max reticulon-like protein B8 (LOC100782928), transcript variant X6, mRNA	reticulon-like protein B8(LOC100782928)	coding protein	psRNATarget
XM_014763521.1	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:167   UCCAAAUCCAAAUCCAAAUC   186 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100820348 (LOC100820348), transcript variant X2, mRNA	uncharacterized LOC100820348(LOC100820348)	coding protein	psRNATarget
NM_001317548.1	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:248   UCCAAAUCCAAAUCCAAAUC   267 Target Full Sequence	2.5	Glycine max uncharacterized LOC100778090 (LOC100778090), mRNA	uncharacterized LOC100778090(LOC100778090)	coding protein	psRNATarget
BT094311.1	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:250   UCCAAAUCCAAAUCCAAAUC   269 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-18B13 unknown mRNA	NA	coding protein	psRNATarget
XM_006602212.2	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:44   UCCAAAUCCAAAUCAAAAUC   63 Target Full Sequence	2.5	PREDICTED: Glycine max reticulon-like protein B8 (LOC100782928), transcript variant X4, mRNA	reticulon-like protein B8(LOC100782928)	coding protein	psRNATarget
XM_006602210.2	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:53   UCCAAAUCCAAAUCAAAAUC   72 Target Full Sequence	2.5	PREDICTED: Glycine max reticulon-like protein B8 (LOC100782928), transcript variant X1, mRNA	reticulon-like protein B8(LOC100782928)	coding protein	psRNATarget
AK285339.1	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:180   UCCAAAUCCAAAUCCAAAUC   199 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-07-L20	NA	coding protein	psRNATarget
XM_006602211.2	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:55   UCCAAAUCCAAAUCAAAAUC   74 Target Full Sequence	2.5	PREDICTED: Glycine max reticulon-like protein B8 (LOC100782928), transcript variant X3, mRNA	reticulon-like protein B8(LOC100782928)	coding protein	psRNATarget
XM_003555665.3	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:197   UCCAAAUCCAAAUCCAAAUC   216 Target Full Sequence	2.5	PREDICTED: Glycine max probable voltage-gated potassium channel subunit beta (LOC100807722), mRNA	probable voltage-gated potassium channel subunit beta(LOC100807722)	coding protein	psRNATarget
XM_014770208.1	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:39   UCCAAAUCCAAAUCCAAAUC   58 Target Full Sequence	2.5	PREDICTED: Glycine max protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like (LOC100783283), transcript variant X2, mRNA	protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like(LOC100783283)	coding protein	psRNATarget
XM_006601732.2	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:34   UCCAAAUCCAAAUCCAAAUC   53 Target Full Sequence	2.5	PREDICTED: Glycine max protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like (LOC100783283), transcript variant X1, mRNA	protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like(LOC100783283)	coding protein	psRNATarget
XM_003537929.3	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:155   UCCAAAUCCAAAUCCAAAUC   174 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor PCL1 (LOC100802217), transcript variant X1, mRNA	transcription factor PCL1(LOC100802217)	coding protein	psRNATarget
XM_003551888.3	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:304   UCCAAAUCCAAAUCCAAAUC   323 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100778090 (LOC100778090), transcript variant X2, mRNA	uncharacterized LOC100778090(LOC100778090)	coding protein	psRNATarget
XM_003521622.3	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:206   UCCAAAUCCAAAUCCAAAUC   225 Target Full Sequence	2.5	PREDICTED: Glycine max importin subunit alpha-2-like (LOC100798125), mRNA	importin subunit alpha-2-like(LOC100798125)	coding protein	psRNATarget
XM_006602206.2	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:304   UCCAAAUCCAAAUCCAAAUC   323 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100778090 (LOC100778090), transcript variant X1, mRNA	uncharacterized LOC100778090(LOC100778090)	coding protein	psRNATarget
AK244134.1	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:6   UCCAAAUCCAAAUCCAAAUC   25 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-02-C24	NA	coding protein	psRNATarget
XM_003523375.3	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   ||||*|||||||||*||||| targets:37   UCCAAAUCCAAAUCCAAAUC   56 Target Full Sequence	2.5	PREDICTED: Glycine max NAD kinase 2, chloroplastic (LOC100796381), transcript variant X1, mRNA	NAD kinase 2, chloroplastic(LOC100796381)	coding protein	psRNATarget
XM_003518140.3	ncRNA:20   AGGUGUAGGUUUAGAUUUAG   1   *|||||||||||||*||||* targets:50   CCCACAUCCAAAUCCAAAUA   69 Target Full Sequence	2.5	PREDICTED: Glycine max apyrase 1-like (LOC100804818), mRNA	apyrase 1-like(LOC100804818)	coding protein	psRNATarget