Search result

BaseInfo

ncRNA ID	novel_gma_miR3138
Species	Glycine max
Class	miRNA
Genome position	Chr18:429980-430156 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451670
Length	20
Mature sequence(if miRNA)	158 - CACUUAUAGAAGAAGAAAAU - 177
Stem-loop(if miRNA)	--  C    A         AAUAAGAAGU             GU      -C    A            --------AG        U     CCACU   CA UUAU GAAGAAGAA          UAAAAUGAAUUAA  UUUUCU  AUAA UUAAAAUCAACU          AACUUUUA AGAAG     C   || |||| |||||||||          |||||||||||||  ||||||  |||| ||||||||||||          |||||||| |||||   GU AAUA CUUUUUUUU          AUUUUACUUAAUU  AAAAGA  UAUU AAUUUUAGUUGA          UUGAAAAU UCUUC     A UU  A    A         --------AU             --      AA    C            AUGUAUAGAA        C     AAUUU
Stem-loop sequence	CACUUAUAGAAGAAGAAAAUAAGAAGUUAAAAUGAAUUAAGUUUUUCUCAUAAAUUAAAAUCAACUAGAACUUUUAUAGAAGCCACUCAUUUAACUUCUCUAAAAGUUAAGAUAUGUAAGUUGAUUUUAACUUAUAAAGAAAAUUAAUUCAUUUUAUAUUUUUUUUCAAUAAAUGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006581633.2	ncRNA:20   UAAAAGAAGAAGAUAUUCAC   1   ||||*||||||||||||||| targets:1892   AUUUCCUUCUUCUAUAAGUG   1911 Target Full Sequence	1.0	PREDICTED: Glycine max ABC transporter B family member 14-like (LOC102668242), mRNA	ABC transporter B family member 14-like(LOC102668242)	coding protein	psRNATarget
XM_014762006.1	ncRNA:20   UAAAAGAAGAAGAUAUUCAC   1   ||||||||||||*||||||| targets:1012   AUUUUCUUCUUCAAUAAGUG   1031 Target Full Sequence	1.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase At1g63170-like (LOC102670411), transcript variant X2, mRNA	E3 ubiquitin-protein ligase At1g63170-like(LOC102670411)	coding protein	psRNATarget
XM_014776866.1	ncRNA:20   UAAAAGAAGAAGAUAUUCAC   1   ||||||||||*||||||||| targets:439   AUUUUCUUCUCCUAUAAGUG   458 Target Full Sequence	1.5	PREDICTED: Glycine max U-box domain-containing protein 35-like (LOC100818628), transcript variant X2, mRNA	U-box domain-containing protein 35-like(LOC100818628)	coding protein	psRNATarget
XM_014774850.1	ncRNA:20   UAAAAGAAGAAGAUAUUCAC   1   =||||||||||*|||||||| targets:287   GUUUUCUUCUUGUAUAAGUG   306 Target Full Sequence	1.5	PREDICTED: Glycine max calcium-binding mitochondrial carrier protein SCaMC-2-B-like (LOC100801703), transcript variant X8, mRNA	calcium-binding mitochondrial carrier protein SCaMC-2-B-like(LOC100801703)	coding protein	psRNATarget
XM_006578680.2	ncRNA:20   UAAAAGAAGAAGAUAUUCAC   1   =||||||||||*|||||||| targets:290   GUUUUCUUCUUGUAUAAGUG   309 Target Full Sequence	1.5	PREDICTED: Glycine max calcium-binding mitochondrial carrier protein SCaMC-2-B-like (LOC100801703), transcript variant X6, mRNA	calcium-binding mitochondrial carrier protein SCaMC-2-B-like(LOC100801703)	coding protein	psRNATarget
BT094590.1	ncRNA:20   UAAAAGAAGAAGAUAUUCAC   1   ||||||||=||||||||||* targets:574   AUUUUCUUUUUCUAUAAGUA   593 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-14B20 unknown mRNA	NA	coding protein	psRNATarget