Search result

BaseInfo

ncRNA ID	novel_gma_miR3123
Species	Glycine max
Class	miRNA
Genome position	Chr17:40448989-40449133 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451670
Length	21
Mature sequence(if miRNA)	125 - UUCUUUUUCCUUCUUUUUUAU - 145
Stem-loop(if miRNA)	--             ---------       UUU   UGCAACAUGAGAUUGGGAGGUUUUUUCAAUGGUAGUGGUU   AAAGGAGAGGGAA         UGAAAGG   UCU                                        C   |||||||||||||         |||||||   |||                                        U   UUUUUUCUUCCUU         CCGUCAU   CGA                                        U UA             UUUCUUCAU       -GA   CUACUCGAAACUGUUAAAUUAAAAUUCGUCCUAUUUUAAU
Stem-loop sequence	AAAGGAGAGGGAAUGAAAGGUUUUCUUGCAACAUGAGAUUGGGAGGUUUUUUCAAUGGUAGUGGUUCUUUAAUUUUAUCCUGCUUAAAAUUAAAUUGUCAAAGCUCAUCAGCAGUACUGCCUACUUCUUUUUCCUUCUUUUUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006597568.2	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   **|=||||||||||||||||| targets:2223   CAAGAAAAGAAGGAAAAAGAA   2243 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100785882 (LOC100785882), transcript variant X1, mRNA	uncharacterized LOC100785882(LOC100785882)	coding protein	psRNATarget
XM_003546166.3	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   **|=||||||||||||||||| targets:2190   CAAGAAAAGAAGGAAAAAGAA   2210 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100785882 (LOC100785882), transcript variant X2, mRNA	uncharacterized LOC100785882(LOC100785882)	coding protein	psRNATarget
XM_006589123.2	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   |||||||||||*||||||||| targets:30   AUAAAAAAGAAAGAAAAAGAA   50 Target Full Sequence	1.5	PREDICTED: Glycine max protein WVD2-like 1 (LOC100785589), transcript variant X1, mRNA	protein WVD2-like 1(LOC100785589)	coding protein	psRNATarget
XM_006589124.2	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   |||||||||||*||||||||| targets:29   AUAAAAAAGAAAGAAAAAGAA   49 Target Full Sequence	1.5	PREDICTED: Glycine max protein WVD2-like 1 (LOC100785589), transcript variant X2, mRNA	protein WVD2-like 1(LOC100785589)	coding protein	psRNATarget
XM_014763204.1	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   |||||||||||*||||||||| targets:30   AUAAAAAAGAAAGAAAAAGAA   50 Target Full Sequence	1.5	PREDICTED: Glycine max protein WVD2-like 1 (LOC100785589), transcript variant X3, mRNA	protein WVD2-like 1(LOC100785589)	coding protein	psRNATarget
XM_003536715.3	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   =*|||||||||||||=||||| targets:56   GAAAAAAAGAAGGAAGAAGAA   76 Target Full Sequence	1.5	PREDICTED: Glycine max CASP-like protein 4C1 (LOC100813033), mRNA	CASP-like protein 4C1(LOC100813033)	coding protein	psRNATarget
XM_014769324.1	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   ||=||=||||||||||||||| targets:657   AUGAAGAAGAAGGAAAAAGAA   677 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100811569 (LOC100811569), transcript variant X1, mRNA	uncharacterized LOC100811569(LOC100811569)	coding protein	psRNATarget
BT097215.1	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   ||=||=||||||||||||||| targets:610   AUGAAGAAGAAGGAAAAAGAA   630 Target Full Sequence	2.0	Soybean clone JCVI-FLGm-21B6 unknown mRNA	NA	coding protein	psRNATarget
NM_001255143.2	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   ||=||=||||||||||||||| targets:608   AUGAAGAAGAAGGAAAAAGAA   628 Target Full Sequence	2.0	Glycine max uncharacterized LOC100811569 (LOC100811569), mRNA	uncharacterized LOC100811569(LOC100811569)	coding protein	psRNATarget
NM_001255489.2	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   |*|=|=||||||||||||||| targets:871   AAAGAGAAGAAGGAAAAAGAA   891 Target Full Sequence	2.0	Glycine max heavy-metal-associated domain-containing protein (LOC100814726), mRNA	uncharacterized LOC100814726(LOC100814726)	coding protein	psRNATarget
BT093502.1	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   |*|=|=||||||||||||||| targets:872   AAAGAGAAGAAGGAAAAAGAA   892 Target Full Sequence	2.0	Soybean clone JCVI-FLGm-17K4 unknown mRNA	NA	coding protein	psRNATarget
AK245630.1	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   ||||||=||||*||||||||| targets:67   AUAAAAGAGAAAGAAAAAGAA   87 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-36-C22	NA	coding protein	psRNATarget
BT096722.1	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   ||||||=||||*||||||||| targets:40   AUAAAAGAGAAAGAAAAAGAA   60 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-21G19 unknown mRNA	NA	coding protein	psRNATarget
NM_001289342.1	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   ||||||=||||*||||||||| targets:37   AUAAAAGAGAAAGAAAAAGAA   57 Target Full Sequence	2.5	Glycine max probable nucleoredoxin 2-like (LOC100815038), mRNA	probable nucleoredoxin 2-like(LOC100815038)	coding protein	psRNATarget
XM_003534185.3	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   |*|||=|||||||||=||||| targets:244   AGAAAGAAGAAGGAAGAAGAA   264 Target Full Sequence	2.5	PREDICTED: Glycine max probable serine/threonine-protein kinase sky1 (LOC100814976), mRNA	probable serine/threonine-protein kinase sky1(LOC100814976)	coding protein	psRNATarget
XM_014762022.1	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   |*=||||||||||||||=||| targets:339   AAGAAAAAGAAGGAAAAGGAA   359 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100781444 (LOC100781444), transcript variant X3, mRNA	uncharacterized LOC100781444(LOC100781444)	coding protein	psRNATarget
XM_003533789.3	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   |*=||||||||||||||=||| targets:338   AAGAAAAAGAAGGAAAAGGAA   358 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100781444 (LOC100781444), transcript variant X1, mRNA	uncharacterized LOC100781444(LOC100781444)	coding protein	psRNATarget
XM_006596977.2	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   |*=||||||||||||||=||| targets:299   AAGAAAAAGAAGGAAAAGGAA   319 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100799271 (LOC100799271), transcript variant X1, mRNA	uncharacterized LOC100799271(LOC100799271)	coding protein	psRNATarget
BT093366.1	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   |*=||||||||||||||=||| targets:152   AAGAAAAAGAAGGAAAAGGAA   172 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-17O5 unknown mRNA	NA	coding protein	psRNATarget
NM_001252904.1	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   |*=||||||||||||||=||| targets:152   AAGAAAAAGAAGGAAAAGGAA   172 Target Full Sequence	2.5	Glycine max uncharacterized LOC100799271 (LOC100799271), mRNA	uncharacterized LOC100799271(LOC100799271)	coding protein	psRNATarget
XM_006583771.2	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   =*||=||||||||||=||||| targets:2190   GAAAGAAAGAAGGAAGAAGAA   2210 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100818817 (LOC100818817), transcript variant X1, mRNA	uncharacterized LOC100818817(LOC100818817)	coding protein	psRNATarget
XM_006583772.2	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   =*||=||||||||||=||||| targets:2187   GAAAGAAAGAAGGAAGAAGAA   2207 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100818817 (LOC100818817), transcript variant X2, mRNA	uncharacterized LOC100818817(LOC100818817)	coding protein	psRNATarget
XM_006583773.2	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   =*||=||||||||||=||||| targets:2185   GAAAGAAAGAAGGAAGAAGAA   2205 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100818817 (LOC100818817), transcript variant X3, mRNA	uncharacterized LOC100818817(LOC100818817)	coding protein	psRNATarget
XM_014765630.1	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   =*||=||||||||||=||||| targets:1979   GAAAGAAAGAAGGAAGAAGAA   1999 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100784945 (LOC100784945), transcript variant X3, mRNA	uncharacterized LOC100784945(LOC100784945)	coding protein	psRNATarget
XM_014765629.1	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   =*||=||||||||||=||||| targets:1973   GAAAGAAAGAAGGAAGAAGAA   1993 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100784945 (LOC100784945), transcript variant X1, mRNA	uncharacterized LOC100784945(LOC100784945)	coding protein	psRNATarget
XM_006594243.2	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   =*||=||||||||||=||||| targets:1968   GAAAGAAAGAAGGAAGAAGAA   1988 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100784945 (LOC100784945), transcript variant X2, mRNA	uncharacterized LOC100784945(LOC100784945)	coding protein	psRNATarget
XM_006594244.2	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   =*||=||||||||||=||||| targets:1967   GAAAGAAAGAAGGAAGAAGAA   1987 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100784945 (LOC100784945), transcript variant X4, mRNA	uncharacterized LOC100784945(LOC100784945)	coding protein	psRNATarget
XM_003549005.3	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   **|||||=|||||||=||||| targets:73   CAAAAAAGGAAGGAAGAAGAA   93 Target Full Sequence	2.5	PREDICTED: Glycine max DELLA protein RGL1-like (LOC100775374), mRNA	DELLA protein RGL1-like(LOC100775374)	coding protein	psRNATarget
XM_006586716.2	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   =*==||||||||||||||||= targets:235   GAGGAAAAGAAGGAAAAAGAG   255 Target Full Sequence	3.0	PREDICTED: Glycine max translation initiation factor IF-2-like (LOC100807490), transcript variant X1, mRNA	translation initiation factor IF-2-like(LOC100807490)	coding protein	psRNATarget
XM_003534891.3	ncRNA:21   UAUUUUUUCUUCCUUUUUCUU   1   =*==||||||||||||||||= targets:228   GAGGAAAAGAAGGAAAAAGAG   248 Target Full Sequence	3.0	PREDICTED: Glycine max translation initiation factor IF-2-like (LOC100807490), transcript variant X2, mRNA	translation initiation factor IF-2-like(LOC100807490)	coding protein	psRNATarget