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BaseInfo

ncRNA ID novel_gma_miR3122
Species Glycine max
Class miRNA
Genome position Chr17:36084790-36084855 [+]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 20
Mature sequence(if miRNA) 1 - UUUACUUCUAAUUUUUAUGU - 20
Stem-loop(if miRNA) --      UC         ---UG     C   G
  UUUACU  UAAUUUUUA     UUUAU AAU G
  ||||||  |||||||||     ||||| ||| A
  AAAUGG  AUUAAAAAU     GAAUA UUA A
UA      GA         UCUUU     U   A
Stem-loop sequence UUUACUUCUAAUUUUUAUGUUUAUCAAUGGAAAAUUUAUAAGUUUCUUAAAAAUUAAGGGUAAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003539838.3
ncRNA:20   UGUAUUUUUAAUCUUCAUUU   1
  |*||||||||||*|||||||
targets:182   AAAUAAAAAUUAAAAGUAAA   201

2.5 PREDICTED: Glycine max B-box zinc finger protein 32-like (LOC100789532), transcript variant X2, mRNA B-box zinc finger protein 32-like(LOC100789532) coding protein psRNATarget
XM_006592342.2
ncRNA:20   UGUAUUUUUAAUCUUCAUUU   1
  |*||||||||||*|||||||
targets:188   AAAUAAAAAUUAAAAGUAAA   207

2.5 PREDICTED: Glycine max B-box zinc finger protein 32-like (LOC100789532), transcript variant X1, mRNA B-box zinc finger protein 32-like(LOC100789532) coding protein psRNATarget