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BaseInfo

ncRNA ID novel_gma_miR3112
Species Glycine max
Class miRNA
Genome position Chr16:36325755-36325845 [-]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 20
Mature sequence(if miRNA) 1 - GAGUGAAAAUGAAAAAAAAA - 20
Stem-loop(if miRNA) --UUG              G      ---G  -UAUAA    G   A
     UUUUUAUUUUCAUU AAAAUA    AA      UGAU AAA U
     |||||||||||||| ||||||    ||      |||| ||| A
     AAAAGUAAAAGUGA UUUUAU    UU      AUUG UUU U
AAAAA              G      AAAA  UUUUAG    G   G
Stem-loop sequence UUGUUUUUAUUUUCAUUGAAAAUAGAAUAUAAUGAUGAAAAUAUGUUUGGUUAGAUUUUUUAAAAUAUUUUGAGUGAAAAUGAAAAAAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006577018.2
ncRNA:20   AAAAAAAAAGUAAAAGUGAG   1
  ||||||||||||||||*|||
targets:1122   UUUUUUUUUCAUUUUCUCUC   1141

1.5 PREDICTED: Glycine max pollen-specific leucine-rich repeat extensin-like protein 2 (LOC100799522), mRNA pollen-specific leucine-rich repeat extensin-like protein 2(LOC100799522) coding protein psRNATarget
BT097529.1
ncRNA:20   AAAAAAAAAGUAAAAGUGAG   1
  ||||||||||||||*|||||
targets:1004   UUUUUUUUUCAUUUGCACUC   1023

1.5 Soybean clone JCVI-FLGm-22K21 unknown mRNA NA coding protein psRNATarget
BT097694.1
ncRNA:20   AAAAAAAAAGUAAAAGUGAG   1
  ||||||||||||||*|||||
targets:983   UUUUUUUUUCAUUUGCACUC   1002

1.5 Soybean clone JCVI-FLGm-22M12 unknown mRNA NA coding protein psRNATarget
NM_001317430.1
ncRNA:20   AAAAAAAAAGUAAAAGUGAG   1
  ||||||||||||||*|||||
targets:981   UUUUUUUUUCAUUUGCACUC   1000

1.5 Glycine max short-chain dehydrogenase reductase 3b-like (LOC100811279), mRNA short-chain dehydrogenase reductase 3b-like(LOC100811279) coding protein psRNATarget
XM_003554520.3
ncRNA:20   AAAAAAAAAGUAAAAGUGAG   1
  *|||||||||||||*|||||
targets:1197   CUUUUUUUUCAUUUGCACUC   1216

1.5 PREDICTED: Glycine max short-chain dehydrogenase reductase 3b (LOC100777244), mRNA short-chain dehydrogenase reductase 3b(LOC100777244) coding protein psRNATarget
XM_014776632.1
ncRNA:20   AAA-AAAAAAGUAAAAGUGAG   1
  |||-|||||||||||||||||
targets:39   UUUAUUUUUUCAUUUUCACUC   59

2.0 PREDICTED: Glycine max radial spoke head 10 homolog B-like (LOC102660280), transcript variant X1, mRNA radial spoke head 10 homolog B-like(LOC102660280) coding protein psRNATarget
XM_014776642.1
ncRNA:20   AAA-AAAAAAGUAAAAGUGAG   1
  |||-|||||||||||||||||
targets:40   UUUAUUUUUUCAUUUUCACUC   60

2.0 PREDICTED: Glycine max radial spoke head 10 homolog B-like (LOC102660280), transcript variant X11, mRNA radial spoke head 10 homolog B-like(LOC102660280) coding protein psRNATarget
XM_014776636.1
ncRNA:20   AAA-AAAAAAGUAAAAGUGAG   1
  |||-|||||||||||||||||
targets:39   UUUAUUUUUUCAUUUUCACUC   59

2.0 PREDICTED: Glycine max radial spoke head 10 homolog B-like (LOC102660280), transcript variant X5, mRNA radial spoke head 10 homolog B-like(LOC102660280) coding protein psRNATarget
XM_014776633.1
ncRNA:20   AAA-AAAAAAGUAAAAGUGAG   1
  |||-|||||||||||||||||
targets:39   UUUAUUUUUUCAUUUUCACUC   59

2.0 PREDICTED: Glycine max radial spoke head 10 homolog B-like (LOC102660280), transcript variant X2, mRNA radial spoke head 10 homolog B-like(LOC102660280) coding protein psRNATarget
XM_014776635.1
ncRNA:20   AAA-AAAAAAGUAAAAGUGAG   1
  |||-|||||||||||||||||
targets:39   UUUAUUUUUUCAUUUUCACUC   59

2.0 PREDICTED: Glycine max radial spoke head 10 homolog B-like (LOC102660280), transcript variant X4, mRNA radial spoke head 10 homolog B-like(LOC102660280) coding protein psRNATarget
XM_014776639.1
ncRNA:20   AAA-AAAAAAGUAAAAGUGAG   1
  |||-|||||||||||||||||
targets:39   UUUAUUUUUUCAUUUUCACUC   59

2.0 PREDICTED: Glycine max radial spoke head 10 homolog B-like (LOC102660280), transcript variant X8, mRNA radial spoke head 10 homolog B-like(LOC102660280) coding protein psRNATarget
XM_014776634.1
ncRNA:20   AAA-AAAAAAGUAAAAGUGAG   1
  |||-|||||||||||||||||
targets:39   UUUAUUUUUUCAUUUUCACUC   59

2.0 PREDICTED: Glycine max radial spoke head 10 homolog B-like (LOC102660280), transcript variant X3, mRNA radial spoke head 10 homolog B-like(LOC102660280) coding protein psRNATarget
XM_014776640.1
ncRNA:20   AAA-AAAAAAGUAAAAGUGAG   1
  |||-|||||||||||||||||
targets:36   UUUAUUUUUUCAUUUUCACUC   56

2.0 PREDICTED: Glycine max radial spoke head 10 homolog B-like (LOC102660280), transcript variant X9, mRNA radial spoke head 10 homolog B-like(LOC102660280) coding protein psRNATarget
XM_014776641.1
ncRNA:20   AAA-AAAAAAGUAAAAGUGAG   1
  |||-|||||||||||||||||
targets:36   UUUAUUUUUUCAUUUUCACUC   56

2.0 PREDICTED: Glycine max radial spoke head 10 homolog B-like (LOC102660280), transcript variant X10, mRNA radial spoke head 10 homolog B-like(LOC102660280) coding protein psRNATarget
XM_014776638.1
ncRNA:20   AAA-AAAAAAGUAAAAGUGAG   1
  |||-|||||||||||||||||
targets:39   UUUAUUUUUUCAUUUUCACUC   59

2.0 PREDICTED: Glycine max radial spoke head 10 homolog B-like (LOC102660280), transcript variant X7, mRNA radial spoke head 10 homolog B-like(LOC102660280) coding protein psRNATarget
XM_014776637.1
ncRNA:20   AAA-AAAAAAGUAAAAGUGAG   1
  |||-|||||||||||||||||
targets:39   UUUAUUUUUUCAUUUUCACUC   59

2.0 PREDICTED: Glycine max radial spoke head 10 homolog B-like (LOC102660280), transcript variant X6, mRNA radial spoke head 10 homolog B-like(LOC102660280) coding protein psRNATarget
XM_003552857.3
ncRNA:20   AAAAAAAAAGUAAAAGUGAG   1
  ||||||||||||||||||*=
targets:298   UUUUUUUUUCAUUUUCACAU   317

2.5 PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At1g06840 (LOC100786467), mRNA probable LRR receptor-like serine/threonine-protein kinase At1g06840(LOC100786467) coding protein psRNATarget
XM_003554834.3
ncRNA:20   AAAAAAAAAGUAAAAGUGAG   1
  ||||||||||*||||||||=
targets:372   UUUUUUUUUCUUUUUCACUU   391

2.5 PREDICTED: Glycine max uncharacterized protein At5g39865-like (LOC100775994), mRNA uncharacterized protein At5g39865-like(LOC100775994) coding protein psRNATarget
XM_006574649.2
ncRNA:20   AAAAAAAAAGUAAAAGUGAG   1
  ||||||||||||||||*||*
targets:175   UUUUUUUUUCAUUUUCUCUG   194

2.5 PREDICTED: Glycine max protein DA1-related 1-like (LOC100806605), transcript variant X5, mRNA protein DA1-related 1-like(LOC100806605) coding protein psRNATarget
XM_003526993.3
ncRNA:20   AAAAAAAAAGUAAAAGUGAG   1
  |||||||||||||||||*|*
targets:2322   UUUUUUUUUCAUUUUCAAUA   2341

2.5 PREDICTED: Glycine max protein EDS1L-like (LOC100819703), mRNA protein EDS1L-like(LOC100819703) coding protein psRNATarget
XM_014774020.1
ncRNA:20   AAAAAAAAAGUAAAAGUGAG   1
  |||||||||*|||||||||*
targets:64   UUUUUUUUUAAUUUUCACUG   83

2.5 PREDICTED: Glycine max uncharacterized LOC100527816 (LOC100527816), mRNA uncharacterized LOC100527816(LOC100527816) coding protein psRNATarget
BT092693.1
ncRNA:20   AAAAAAAAAGUAAAAGUGAG   1
  |||||||||*|||||||||*
targets:66   UUUUUUUUUAAUUUUCACUG   85

2.5 Soybean clone JCVI-FLGm-11D23 unknown mRNA NA coding protein psRNATarget
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