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BaseInfo

ncRNA ID	novel_gma_miR3099
Species	Glycine max
Class	miRNA
Genome position	Chr15:50563607-50563661 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451670
Length	20
Mature sequence(if miRNA)	36 - AAAUCAUGUAAUAAUUUCUC - 55
Stem-loop(if miRNA)	--      -          - U     C   GAAGUU UUACAUGGUU C GAACA A   |||||| |||||||||| | ||||| U   CUUUAA AAUGUACUAA G CUUGU A CU      U          A U     A
Stem-loop sequence	GAAGUUUUACAUGGUUCUGAACACAUAAUGUUCUGAAAUCAUGUAAUAAUUUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003516782.3	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   |||||||||||||||||||* targets:1086   GAGAAAUUAUUACAUGAUUG   1105 Target Full Sequence	1.0	PREDICTED: Glycine max DNA-3-methyladenine glycosylase (LOC100810677), mRNA	DNA-3-methyladenine glycosylase(LOC100810677)	coding protein	psRNATarget
XM_014768590.1	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   ||||||||||||||||=||| targets:437   GAGAAAUUAUUACAUGGUUU   456 Target Full Sequence	1.5	PREDICTED: Glycine max protein DETOXIFICATION 2-like (LOC100782350), mRNA	protein DETOXIFICATION 2-like(LOC100782350)	coding protein	psRNATarget
XM_006583793.2	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   *|||||||||||||||=||| targets:1877   AAGAAAUUAUUACAUGGUUU   1896 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100789398 (LOC100789398), transcript variant X1, mRNA	uncharacterized LOC100789398(LOC100789398)	coding protein	psRNATarget
XM_014778142.1	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   *|||||||||||||||=||| targets:1878   AAGAAAUUAUUACAUGGUUU   1897 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100789398 (LOC100789398), transcript variant X2, mRNA	uncharacterized LOC100789398(LOC100789398)	coding protein	psRNATarget
XM_003551415.3	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   |||||||||||*|||||||| targets:82   GAGAAAUUAUUUCAUGAUUU   101 Target Full Sequence	1.5	PREDICTED: Glycine max probable purine permease 9 (LOC100789651), transcript variant X1, mRNA	probable purine permease 9(LOC100789651)	coding protein	psRNATarget
XM_006602076.2	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   |||||||||||*|||||||| targets:101   GAGAAAUUAUUUCAUGAUUU   120 Target Full Sequence	1.5	PREDICTED: Glycine max probable purine permease 9 (LOC100789651), transcript variant X2, mRNA	probable purine permease 9(LOC100789651)	coding protein	psRNATarget
XM_014765136.1	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   ||||||||||||*||||||| targets:3015   GAGAAAUUAUUAGAUGAUUU   3034 Target Full Sequence	1.5	PREDICTED: Glycine max receptor-like protein kinase (LOC100305430), transcript variant X1, mRNA	receptor-like protein kinase(LOC100305430)	coding protein	psRNATarget
XM_014775434.1	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   ||*||||||||||||||||* targets:2688   GACAAAUUAUUACAUGAUUC   2707 Target Full Sequence	2.0	PREDICTED: Glycine max serine/threonine-protein kinase AtPK2/AtPK19-like (LOC100800825), mRNA	serine/threonine-protein kinase AtPK2/AtPK19-like(LOC100800825)	coding protein	psRNATarget
AK245874.1	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   **|||||||||||||||||* targets:860   CUGAAAUUAUUACAUGAUUG   879 Target Full Sequence	2.0	Glycine max cDNA, clone: GMFL01-44-B18	NA	coding protein	psRNATarget
XM_006595781.2	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   *|*||||||||||||||||* targets:636   AAAAAAUUAUUACAUGAUUC   655 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100805825 (LOC100805825), mRNA	uncharacterized LOC100805825(LOC100805825)	coding protein	psRNATarget
XM_014761846.1	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   ||||||||||||||||=||* targets:3220   GAGAAAUUAUUACAUGGUUC   3239 Target Full Sequence	2.5	PREDICTED: Glycine max probable leucine-rich repeat receptor-like protein kinase At5g49770 (LOC100782366), mRNA	probable leucine-rich repeat receptor-like protein kinase At5g49770(LOC100782366)	coding protein	psRNATarget
NM_001254418.1	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   ||||||||||||||||||** targets:546   GAGAAAUUAUUACAUGAUCC   565 Target Full Sequence	2.5	Glycine max uncharacterized LOC100808139 (LOC100808139), mRNA	uncharacterized LOC100808139(LOC100808139)	coding protein	psRNATarget
BT092332.1	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   |||||||*|||||||||||* targets:711   GAGAAAUAAUUACAUGAUUC   730 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-10N9 unknown mRNA	NA	coding protein	psRNATarget
NM_001249810.2	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   |||||||*|||||||||||* targets:881   GAGAAAUAAUUACAUGAUUC   900 Target Full Sequence	2.5	Glycine max EF-hand, calcium binding motif-containing protein (LOC100527487), mRNA	uncharacterized LOC100527487(LOC100527487)	coding protein	psRNATarget
NM_001249244.2	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   ||*|||||||*||||||||| targets:672   GAUAAAUUAUCACAUGAUUU   691 Target Full Sequence	2.5	Glycine max uncharacterized LOC100306004 (LOC100306004), mRNA	uncharacterized LOC100306004(LOC100306004)	coding protein	psRNATarget
BT089889.1	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   ||*|||||||*||||||||| targets:674   GAUAAAUUAUCACAUGAUUU   693 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-3G15 unknown mRNA	NA	coding protein	psRNATarget
XM_006601672.2	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   ||*|||||||*||||||||| targets:693   GAUAAAUUAUCACAUGAUUU   712 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100306004 (LOC100306004), transcript variant X1, mRNA	uncharacterized LOC100306004(LOC100306004)	coding protein	psRNATarget
XM_014767264.1	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   |||||*||||*||||||||| targets:495   GAGAAUUUAUAACAUGAUUU   514 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100793446 (LOC100793446), transcript variant X3, mRNA	uncharacterized LOC100793446(LOC100793446)	coding protein	psRNATarget
XM_014767262.1	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   |||||*||||*||||||||| targets:493   GAGAAUUUAUAACAUGAUUU   512 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100793446 (LOC100793446), transcript variant X1, mRNA	uncharacterized LOC100793446(LOC100793446)	coding protein	psRNATarget
XM_014767266.1	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   |||||*||||*||||||||| targets:492   GAGAAUUUAUAACAUGAUUU   511 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100793446 (LOC100793446), transcript variant X7, mRNA	uncharacterized LOC100793446(LOC100793446)	coding protein	psRNATarget
XM_014767265.1	ncRNA:20   CUCUUUAAUAAUGUACUAAA   1   |||||*||||*||||||||| targets:498   GAGAAUUUAUAACAUGAUUU   517 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100793446 (LOC100793446), transcript variant X6, mRNA	uncharacterized LOC100793446(LOC100793446)	coding protein	psRNATarget
XM_014772955.1	ncRNA:20   CUCUUUAAUAAUGUACUA-AA   1   *|||||||||||||||||-|| targets:510   CAGAAAUUAUUACAUGAUCUU   530 Target Full Sequence	3.0	PREDICTED: Glycine max heavy metal-associated isoprenylated plant protein 26-like (LOC100779672), transcript variant X2, mRNA	heavy metal-associated isoprenylated plant protein 26-like(LOC100779672)	coding protein	psRNATarget