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BaseInfo

ncRNA ID novel_gma_miR3088
Species Glycine max
Class miRNA
Genome position Chr14:10112594-10112739 [+]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 21
Mature sequence(if miRNA) 1 - AUCUAGGUUAUAAUGUCAAAC - 21
Stem-loop(if miRNA) --A       U    UG    ACAU     A   GUCCC     UU     CCUAUAA   G     -  GG UUGU
   UCUAGGU AUAA  UCAA    GGUAG UAU     CAAUA  GAAAU       AAU UUUAU CU  C    A
   ||||||| ||||  ||||    ||||| |||     |||||  |||||       ||| ||||| ||  |    A
   AGAUCCG UGUU  AGUU    UCAUC AUA     GUUAU  UUUUA       UUG AAGUA GA  G    A
UCA       U    CA    GAAU     A   -ACUC     UU     -------   G     U  AA UAUU
Stem-loop sequence AUCUAGGUUAUAAUGUCAAACAUGGUAGAUAUGUCCCCAAUAUUGAAAUCCUAUAAAAUGUUUAUCUGGCUUGUAAAUUAUGAAAGUAUGAAGGUUAUUUUUUUAUUGCUCAAUAACUACUUAAGUUGAACUUGUUGCCUAGAACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014773422.1
ncRNA:21   CAAACUGUAAUAUUGGAUCUA   1
  ***|||*||||||||||||||
targets:2787   UACUGAAAUUAUAACCUAGAU   2807

2.0 PREDICTED: Glycine max lysine-specific demethylase JMJ25-like (LOC100791796), mRNA lysine-specific demethylase JMJ25-like(LOC100791796) coding protein psRNATarget