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BaseInfo

ncRNA ID novel_gma_miR3086
Species Glycine max
Class miRNA
Genome position Chr14:2761926-2762015 [-]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 20
Mature sequence(if miRNA) 71 - AACUUUUAAAACCAUAAGUU - 90
Stem-loop(if miRNA) --                      UG CUCUA   -  UUUUAAAUA
  AACUUUUAAAACCAUAAGUUUU  U     UAU UU         C
  ||||||||||||||||||||||  |     ||| ||         C
  UUGAAAAUUUUGGUAUUCAAAA  A     GGG UU         C
GG                      GU ----A   A  GAUUUCAAA
Stem-loop sequence AACUUUUAAAACCAUAAGUUUUUGUCUCUAUAUUUUUUUAAAUACCCAAACUUUAGUUAGGGAAUGAAAACUUAUGGUUUUAAAAGUUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003555770.3
ncRNA:20   UUGAAUACCAAAAUUUUCAA   1
  |||||||||||||||||||*
targets:1459   AACUUAUGGUUUUAAAAGUA   1478

1.0 PREDICTED: Glycine max probable xyloglucan endotransglucosylase/hydrolase protein 28 (LOC100817874), mRNA probable xyloglucan endotransglucosylase/hydrolase protein 28(LOC100817874) coding protein psRNATarget
XM_014772020.1
ncRNA:20   UUGAAUACCAAAAUUUUCAA   1
  |||||=|||||||||||||*
targets:1033   AACUUGUGGUUUUAAAAGUC   1052

2.0 PREDICTED: Glycine max uncharacterized LOC100790222 (LOC100790222), transcript variant X4, mRNA uncharacterized LOC100790222(LOC100790222) coding protein psRNATarget
BT096980.1
ncRNA:20   UUGAAUACCAAAAUUUUCAA   1
  *||||=||||||||=|||||
targets:533   CACUUGUGGUUUUAGAAGUU   552

2.5 Soybean clone JCVI-FLGm-21M18 unknown mRNA NA coding protein psRNATarget
XM_003529187.3
ncRNA:20   UUGAAUACCAAAAUUUUCAA   1
  *||||=||||||||=|||||
targets:1480   CACUUGUGGUUUUAGAAGUU   1499

2.5 PREDICTED: Glycine max probable xyloglucan endotransglucosylase/hydrolase protein 28 (LOC100778185), transcript variant X1, mRNA probable xyloglucan endotransglucosylase/hydrolase protein 28(LOC100778185) coding protein psRNATarget