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BaseInfo

ncRNA ID novel_gma_miR3083
Species Glycine max
Class miRNA
Genome position Chr14:565029-565085 [-]
Reference genome Glycine_max_v2.0
Source SRR1294485;SRR1295517;SRR1294478
Length 24
Mature sequence(if miRNA) 1 - GUGGGAUAAGGCUUUGUUGUGGUA - 24
Stem-loop(if miRNA) --                          
  CCACAACAAAGUCUUAUCCCACUAGGU
  ||||||||||||||||||||||||||C
  GGUGUUGUUUCGGAAUAGGGUGAUCCA
AU                          
Stem-loop sequence CCACAACAAAGUCUUAUCCCACUAGGUCACCUAGUGGGAUAAGGCUUUGUUGUGGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014777861.1
ncRNA:24   AUGGUGUUGUUUCGGAAUAGGGUG   1
  *||*||||||||||||||||||||
targets:1961   AACAACAACAAAGCCUUAUCCCAC   1984

0.0 PREDICTED: Glycine max uncharacterized LOC100797863 (LOC100797863), transcript variant X2, mRNA uncharacterized LOC100797863(LOC100797863) coding protein psRNATarget
XM_006587459.2
ncRNA:24   AUGGUGUUGUUUCGGAAUAGGGUG   1
  *||*||||||||||||||||||||
targets:2019   AACAACAACAAAGCCUUAUCCCAC   2042

0.0 PREDICTED: Glycine max uncharacterized LOC102663636 (LOC102663636), mRNA uncharacterized LOC102663636(LOC102663636) coding protein psRNATarget
XM_006583322.2
ncRNA:24   AUGGUGUUGUUUCGGAAUAGGGUG   1
  *||*||||||||||||||||||||
targets:2067   AACAACAACAAAGCCUUAUCCCAC   2090

0.0 PREDICTED: Glycine max uncharacterized LOC100797863 (LOC100797863), transcript variant X1, mRNA uncharacterized LOC100797863(LOC100797863) coding protein psRNATarget
XM_006578921.2
ncRNA:24   AUGGUGUUGUUUCGGAAUAGGGUG   1
  *=|*||||||||||||||||||||
targets:285   AGCAACAACAAAGCCUUAUCCCAC   308

0.0 PREDICTED: Glycine max uncharacterized LOC100819473 (LOC100819473), transcript variant X2, mRNA uncharacterized LOC100819473(LOC100819473) coding protein psRNATarget
XM_006578920.2
ncRNA:24   AUGGUGUUGUUUCGGAAUAGGGUG   1
  *=|*||||||||||||||||||||
targets:285   AGCAACAACAAAGCCUUAUCCCAC   308

0.0 PREDICTED: Glycine max uncharacterized LOC100819473 (LOC100819473), transcript variant X1, mRNA uncharacterized LOC100819473(LOC100819473) coding protein psRNATarget
XM_014770972.1
ncRNA:24   AUGGUGUUGUUUCGGAAUAGGGUG   1
  *|**||||||||||||||||||||
targets:2891   AAAAACAACAAAGCCUUAUCCCAC   2914

0.0 PREDICTED: Glycine max uncharacterized LOC106797151 (LOC106797151), mRNA uncharacterized LOC106797151(LOC106797151) coding protein psRNATarget
XM_003553510.3
ncRNA:24   AUGGUGUUGUUUCGGAAUAGGGUG   1
  *||*|||||||||||||||=||||
targets:170   AACAACAACAAAGCCUUAUUCCAC   193

1.5 PREDICTED: Glycine max mannan synthase 1-like (LOC100796175), mRNA mannan synthase 1-like(LOC100796175) coding protein psRNATarget
XM_014774180.1
ncRNA:24   AUGGUGUUGUUUCGGAAUAGGGUG   1
  *||*|||||||*||||||||||||
targets:790   AACAACAACAACGCCUUAUCCCAC   813

1.5 PREDICTED: Glycine max RNA-directed DNA polymerase homolog (LOC106798202), mRNA RNA-directed DNA polymerase homolog(LOC106798202) coding protein psRNATarget
BT094865.1
ncRNA:24   AUGGUGUUGUUUCGGAAUAGGGUG   1
  *||*|||||||*||||||||||||
targets:76   AACAACAACAACGCCUUAUCCCAC   99

1.5 Soybean clone JCVI-FLGm-6G14 unknown mRNA NA coding protein psRNATarget
XM_014774865.1
ncRNA:24   AUGGUGUUGUUUCGGAAUAGGGUG   1
  *||*|||||||*||||||||||||
targets:1134   AACAACAACAACGCCUUAUCCCAC   1157

1.5 PREDICTED: Glycine max NAD-dependent protein deacylase SRT2-like (LOC100815194), transcript variant X4, mRNA NAD-dependent protein deacylase SRT2-like(LOC100815194) coding protein psRNATarget
XM_006601167.2
ncRNA:24   AUGGUGUUGUUUCGGAAUAGGGUG   1
  *||*|||||||*||||||||||||
targets:185   AACAACAACAACGCCUUAUCCCAC   208

1.5 PREDICTED: Glycine max cytosolic Fe-S cluster assembly factor NBP35-like (LOC100777003), transcript variant X2, mRNA cytosolic Fe-S cluster assembly factor NBP35-like(LOC100777003) coding protein psRNATarget
XM_006585565.2
ncRNA:24   AUGGUGUUGUUUCGGAAUAGGGUG   1
  *||*|||||||*||||||||||||
targets:282   AACAACAACAACGCCUUAUCCCAC   305

1.5 PREDICTED: Glycine max uncharacterized LOC100788011 (LOC100788011), transcript variant X1, mRNA uncharacterized LOC100788011(LOC100788011) coding protein psRNATarget
XM_014764248.1
ncRNA:24   AUGGUGUUGUUUCGGAAUAGGGUG   1
  *|**||||||=|||||||||=|||
targets:2522   AAGAACAACAGAGCCUUAUCUCAC   2545

2.5 PREDICTED: Glycine max DNA polymerase epsilon catalytic subunit A-like (LOC100778115), mRNA DNA polymerase epsilon catalytic subunit A-like(LOC100778115) coding protein psRNATarget
XM_014772356.1
ncRNA:24   AUGGUGUUGUUUCGGAAUAGGGUG   1
  |||*||||||*|*|||||||||||
targets:97   UACAACAACAUAUCCUUAUCCCAC   120

2.5 PREDICTED: Glycine max vacuolar amino acid transporter 1-like (LOC100812006), transcript variant X2, mRNA vacuolar amino acid transporter 1-like(LOC100812006) coding protein psRNATarget
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