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BaseInfo

ncRNA ID novel_gma_miR3080
Species Glycine max
Class miRNA
Genome position Chr14:17466512-17466634 [-]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 20
Mature sequence(if miRNA) 1 - UUCAUUUUCAUUUUGUUGUA - 20
Stem-loop(if miRNA) --G        -   U   U   GCUAUUCAAGA         AGUGGA       UGA    UAAAU
   GACAAGGU AGA UGA AGA           AGGGAGGGA      AAGGCAG   GUGC     A
   |||||||| ||| ||| |||           |||||||||      |||||||   ||||
   UUGUUUUA UUU ACU UCU           UUUCUCCCU      UUCCGUU   UACG     U
AUG        C   U   -   --------AUG         ---AAA       UUG    UUUCA
Stem-loop sequence GGACAAGGUAGAUUGAUAGAGCUAUUCAAGAAGGGAGGGAAGUGGAAAGGCAGUGAGUGCUAAAUAUACUUUGCAUGUUUUGCCUUAAAUCCCUCUUUGUAUCUUCAUUUUCAUUUUGUUGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003519858.3
ncRNA:20   AUGUUGUUUUACUUUUACUU   1
  *|||||||||||||||||||
targets:54   CACAACAAAAUGAAAAUGAA   73

0.0 PREDICTED: Glycine max probable galacturonosyltransferase-like 2 (LOC100805007), mRNA probable galacturonosyltransferase-like 2(LOC100805007) coding protein psRNATarget
XM_003539989.3
ncRNA:20   AUGUUGUUUUACUUUUACUU   1
  *||||=|||||||||||||=
targets:2673   CACAAUAAAAUGAAAAUGAG   2692

2.0 PREDICTED: Glycine max kinesin-3-like (LOC100784221), mRNA kinesin-3-like(LOC100784221) coding protein psRNATarget
XM_003525064.3
ncRNA:20   AUGUUGUUUUACUUUUACUU   1
  *|*|=|||||||||||||||
targets:2000   GAAAGCAAAAUGAAAAUGAA   2019

2.0 PREDICTED: Glycine max U-box domain-containing protein 27-like (LOC100781196), mRNA U-box domain-containing protein 27-like(LOC100781196) coding protein psRNATarget
XM_014764702.1
ncRNA:20   AUGUUGUUUUACUUUUACUU   1
  *=|||||||||||||=||||
targets:383   AGCAACAAAAUGAAAGUGAA   402

2.5 PREDICTED: Glycine max uncharacterized LOC106795284 (LOC106795284), mRNA uncharacterized LOC106795284(LOC106795284) coding protein psRNATarget
XM_003527265.3
ncRNA:20   AUGUUGUUUUACUUUUACUU   1
  *||||=|||=||||||||||
targets:2816   CACAAUAAAGUGAAAAUGAA   2835

2.5 PREDICTED: Glycine max kinesin-3-like (LOC100788335), transcript variant X2, mRNA kinesin-3-like(LOC100788335) coding protein psRNATarget
XM_003542780.2
ncRNA:20   AUGUUGUUUUACUUUUACUU   1
  |||||*||||||||=|||||
targets:58   UACAAGAAAAUGAAGAUGAA   77

2.5 PREDICTED: Glycine max cytosolic sulfotransferase 15-like (LOC100779412), mRNA cytosolic sulfotransferase 15-like(LOC100779412) coding protein psRNATarget
XM_006602019.2
ncRNA:20   AUGUUGUUUUACUUUUACUU   1
  ||||||||||*||||||||*
targets:62   UACAACAAAAAGAAAAUGAU   81

2.5 PREDICTED: Glycine max ethylene-overproduction protein 1 (LOC100790527), mRNA ethylene-overproduction protein 1(LOC100790527) coding protein psRNATarget
AK286566.1
ncRNA:20   AUGUUGUUUUACUUUUACUU   1
  *|=||||||||||*||||||
targets:263   AAUAACAAAAUGACAAUGAA   282

2.5 Glycine max cDNA, clone: GMFL01-31-H20 NA coding protein psRNATarget
NM_001251771.1
ncRNA:20   AUGUUGUUUUACUUUUACUU   1
  *|=||||||||||*||||||
targets:264   AAUAACAAAAUGACAAUGAA   283

2.5 Glycine max uncharacterized LOC100305916 (LOC100305916), mRNA uncharacterized LOC100305916(LOC100305916) coding protein psRNATarget
BT089748.1
ncRNA:20   AUGUUGUUUUACUUUUACUU   1
  *|=||||||||||*||||||
targets:264   AAUAACAAAAUGACAAUGAA   283

2.5 Soybean clone JCVI-FLGm-2B20 unknown mRNA NA coding protein psRNATarget
XM_014768521.1
ncRNA:20   AUGUUGUUUUACUUUUACUU   1
  *||||*||||||||=|||||
targets:1985   AACAAGAAAAUGAAGAUGAA   2004

2.5 PREDICTED: Glycine max abscisic acid 8'-hydroxylase 1-like (LOC100779810), transcript variant X2, mRNA abscisic acid 8'-hydroxylase 1-like(LOC100779810) coding protein psRNATarget
XM_003547688.3
ncRNA:20   AUGUUGUUUUACUUUUACUU   1
  *||||*||||||||=|||||
targets:2098   AACAAGAAAAUGAAGAUGAA   2117

2.5 PREDICTED: Glycine max abscisic acid 8'-hydroxylase 1-like (LOC100779810), transcript variant X1, mRNA abscisic acid 8'-hydroxylase 1-like(LOC100779810) coding protein psRNATarget
XM_006605953.2
ncRNA:20   AUGUUGUUUUACUUUUACUU   1
  *|*||||||||||||=||||
targets:967   GAAAACAAAAUGAAAGUGAA   986

2.5 PREDICTED: Glycine max putative receptor-like protein kinase At4g00960 (LOC100784223), mRNA putative receptor-like protein kinase At4g00960(LOC100784223) coding protein psRNATarget
XM_014763084.1
ncRNA:20   AUGUUGUUUUACUUUUACUU   1
  **|=|=||||||||||||||
targets:1256   AUCGAUAAAAUGAAAAUGAA   1275

3.0 PREDICTED: Glycine max uncharacterized LOC100791262 (LOC100791262), transcript variant X2, mRNA uncharacterized LOC100791262(LOC100791262) coding protein psRNATarget
XM_014763085.1
ncRNA:20   AUGUUGUUUUACUUUUACUU   1
  **|=|=||||||||||||||
targets:1280   AUCGAUAAAAUGAAAAUGAA   1299

3.0 PREDICTED: Glycine max uncharacterized LOC100791262 (LOC100791262), transcript variant X3, mRNA uncharacterized LOC100791262(LOC100791262) coding protein psRNATarget
XM_003537244.3
ncRNA:20   AUGUUGUUUUACUUUUACUU   1
  **|=|=||||||||||||||
targets:1374   AUCGAUAAAAUGAAAAUGAA   1393

3.0 PREDICTED: Glycine max uncharacterized LOC100791262 (LOC100791262), transcript variant X1, mRNA uncharacterized LOC100791262(LOC100791262) coding protein psRNATarget
BT096537.1
ncRNA:20   AUGUUG-UUUUACUUUUACUU   1
  **||||-||||||||||||||
targets:443   ACCAACGAAAAUGAAAAUGAA   463

3.0 Soybean clone JCVI-FLGm-10A15 unknown mRNA NA coding protein psRNATarget
XM_006580061.2
ncRNA:20   AUGUUG-UUUUACUUUUACUU   1
  **||||-||||||||||||||
targets:2904   AUCAACGAAAAUGAAAAUGAA   2924

3.0 PREDICTED: Glycine max calmodulin-binding transcription activator 4 (LOC100786880), transcript variant X4, mRNA calmodulin-binding transcription activator 4(LOC100786880) coding protein psRNATarget
XM_006580060.2
ncRNA:20   AUGUUG-UUUUACUUUUACUU   1
  **||||-||||||||||||||
targets:2907   AUCAACGAAAAUGAAAAUGAA   2927

3.0 PREDICTED: Glycine max calmodulin-binding transcription activator 4 (LOC100786880), transcript variant X3, mRNA calmodulin-binding transcription activator 4(LOC100786880) coding protein psRNATarget
XM_003524123.3
ncRNA:20   AUGUUG-UUUUACUUUUACUU   1
  **||||-||||||||||||||
targets:2922   AUCAACGAAAAUGAAAAUGAA   2942

3.0 PREDICTED: Glycine max calmodulin-binding transcription activator 4 (LOC100786880), transcript variant X2, mRNA calmodulin-binding transcription activator 4(LOC100786880) coding protein psRNATarget
XM_006580059.2
ncRNA:20   AUGUUG-UUUUACUUUUACUU   1
  **||||-||||||||||||||
targets:2925   AUCAACGAAAAUGAAAAUGAA   2945

3.0 PREDICTED: Glycine max calmodulin-binding transcription activator 4 (LOC100786880), transcript variant X1, mRNA calmodulin-binding transcription activator 4(LOC100786880) coding protein psRNATarget
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