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BaseInfo

ncRNA ID novel_gma_miR3069
Species Glycine max
Class miRNA
Genome position Chr13:16038466-16038516 [+]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 20
Mature sequence(if miRNA) 1 - UGCUGUUUGACCACAUUUGU - 20
Stem-loop(if miRNA) ---UGCU     AC         UUC
       GUUUG  CACAUUUGU   C
       |||||  |||||||||   U
       CAAAC  GUGUAGACG   G
UAACUAU     -C         UAC
Stem-loop sequence UGCUGUUUGACCACAUUUGUUUCCUGCAUGCAGAUGUGCCAAACUAUCAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014768009.1
ncRNA:20   UGUUUACACCAGUUUGUCGU   1
  |||=|||||||*||||||||
targets:1180   ACAGAUGUGGUGAAACAGCA   1199

2.5 PREDICTED: Glycine max ankyrin repeat-containing protein At5g02620-like (LOC100791519), transcript variant X1, mRNA ankyrin repeat-containing protein At5g02620-like(LOC100791519) coding protein psRNATarget
XM_006594943.2
ncRNA:20   UGUUUACACCAGUUUGUCGU   1
  |||=|||||||*||||||||
targets:1241   ACAGAUGUGGUGAAACAGCA   1260

2.5 PREDICTED: Glycine max ankyrin repeat-containing protein At5g02620-like (LOC100779230), transcript variant X3, mRNA ankyrin repeat-containing protein At5g02620-like(LOC100779230) coding protein psRNATarget
XM_006594942.2
ncRNA:20   UGUUUACACCAGUUUGUCGU   1
  |||=|||||||*||||||||
targets:1244   ACAGAUGUGGUGAAACAGCA   1263

2.5 PREDICTED: Glycine max ankyrin repeat-containing protein At5g02620-like (LOC100779230), transcript variant X2, mRNA ankyrin repeat-containing protein At5g02620-like(LOC100779230) coding protein psRNATarget
XM_006594941.2
ncRNA:20   UGUUUACACCAGUUUGUCGU   1
  |||=|||||||*||||||||
targets:1250   ACAGAUGUGGUGAAACAGCA   1269

2.5 PREDICTED: Glycine max ankyrin repeat-containing protein At5g02620-like (LOC100779230), transcript variant X1, mRNA ankyrin repeat-containing protein At5g02620-like(LOC100779230) coding protein psRNATarget
XM_006597233.2
ncRNA:20   UGUUUACACCAGUUUGUCGU   1
  |||=|||||||*||||||||
targets:1373   ACAGAUGUGGUGAAACAGCA   1392

2.5 PREDICTED: Glycine max ankyrin repeat-containing protein At5g02620-like (LOC100791519), transcript variant X2, mRNA ankyrin repeat-containing protein At5g02620-like(LOC100791519) coding protein psRNATarget
XM_003533791.3
ncRNA:20   UGUUUACACCAGUUUGUCGU   1
  *||||*|||||||||||*||
targets:1020   CCAAAGGUGGUCAAACAACA   1039

2.5 PREDICTED: Glycine max p21-activated protein kinase-interacting protein 1-like (LOC100782530), mRNA p21-activated protein kinase-interacting protein 1-like(LOC100782530) coding protein psRNATarget