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BaseInfo

ncRNA ID	novel_gma_miR3062
Species	Glycine max
Class	miRNA
Genome position	Chr1:41869018-41869105 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451670
Length	20
Mature sequence(if miRNA)	1 - AUAUAUAUAUAUAUCGGCUU - 20
Stem-loop(if miRNA)	--A                                     U GAG   AUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUA A |||   ||||||||||||||||||||||||||||||||||||| UUC   UAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAU U    GGC                                     A
Stem-loop sequence	GAGAAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUCGGCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003523768.3	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   *||||*|||||||||||||| targets:1148   UAGCCCAUAUAUAUAUAUAU   1167 Target Full Sequence	1.0	PREDICTED: Glycine max transcription factor MYB39-like (LOC100782792), mRNA	transcription factor MYB39-like(LOC100782792)	coding protein	psRNATarget
XM_003549784.3	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   =||==||||||||||||||| targets:1585   GAGUUGAUAUAUAUAUAUAU   1604 Target Full Sequence	2.0	PREDICTED: Glycine max probable pectate lyase 18 (LOC100101868), mRNA	probable pectate lyase 18(LOC100101868)	coding protein	psRNATarget
EF432112.1	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   =||==||||||||||||||| targets:996   GAGUUGAUAUAUAUAUAUAU   1015 Target Full Sequence	2.0	Glycine max clone GmPL2b pectate lyase precursor (PL2) mRNA, partial cds	NA	coding protein	psRNATarget
XM_006587647.2	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   *=|=|||||||||||||||| targets:2344   UGGUCGAUAUAUAUAUAUAU   2363 Target Full Sequence	2.0	PREDICTED: Glycine max NAC domain-containing protein 7-like (LOC100815845), mRNA	NAC domain-containing protein 7-like(LOC100815845)	coding protein	psRNATarget
XM_003539213.3	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   |||*=||||||||||||||| targets:80   AAGGUGAUAUAUAUAUAUAU   99 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100818582 (LOC100818582), transcript variant X1, mRNA	uncharacterized LOC100818582(LOC100818582)	coding protein	psRNATarget
XM_006590558.2	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   |||*=||||||||||||||| targets:84   AAGGUGAUAUAUAUAUAUAU   103 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100818582 (LOC100818582), transcript variant X2, mRNA	uncharacterized LOC100818582(LOC100818582)	coding protein	psRNATarget
XM_003532882.3	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   =||=|*|||||||||||||| targets:159   GAGUCCAUAUAUAUAUAUAU   178 Target Full Sequence	2.0	PREDICTED: Glycine max myb-related protein Myb4-like (LOC100805511), mRNA	myb-related protein Myb4-like(LOC100805511)	coding protein	psRNATarget
XM_014775798.1	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   *|||=*|||||||||||||| targets:178   UAGCUCAUAUAUAUAUAUAU   197 Target Full Sequence	2.0	PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At5g63710 (LOC100799227), transcript variant X2, mRNA	probable LRR receptor-like serine/threonine-protein kinase At5g63710(LOC100799227)	coding protein	psRNATarget
XM_003555513.3	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   *||=|*|||||||||||||| targets:8   CAGUCUAUAUAUAUAUAUAU   27 Target Full Sequence	2.0	PREDICTED: Glycine max GDSL esterase/lipase At5g33370 (LOC100807720), mRNA	GDSL esterase/lipase At5g33370(LOC100807720)	coding protein	psRNATarget
XM_014769299.1	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   *|||=*|||||||||||||| targets:42   CAGCUUAUAUAUAUAUAUAU   61 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100527710 (LOC100527710), transcript variant X1, mRNA	uncharacterized LOC100527710(LOC100527710)	coding protein	psRNATarget
XM_014769300.1	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   *|||=*|||||||||||||| targets:24   CAGCUUAUAUAUAUAUAUAU   43 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100527710 (LOC100527710), transcript variant X2, mRNA	uncharacterized LOC100527710(LOC100527710)	coding protein	psRNATarget
XM_006600092.2	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   *|||=*|||||||||||||| targets:16   CAGCUUAUAUAUAUAUAUAU   35 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100527710 (LOC100527710), transcript variant X3, mRNA	uncharacterized LOC100527710(LOC100527710)	coding protein	psRNATarget
XM_006583406.2	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   *||*=||||||||||||||| targets:833   UAGAUGAUAUAUAUAUAUAU   852 Target Full Sequence	2.0	PREDICTED: Glycine max protein YLS9-like (LOC100783747), mRNA	protein YLS9-like(LOC100783747)	coding protein	psRNATarget
XM_003547714.3	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   ||*|||*||||||||||||| targets:2189   AAACCGUUAUAUAUAUAUAU   2208 Target Full Sequence	2.0	PREDICTED: Glycine max fimbrin-2-like (LOC100793464), transcript variant X1, mRNA	fimbrin-2-like(LOC100793464)	coding protein	psRNATarget
XM_014769240.1	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   ||*|||*||||||||||||| targets:2181   AAACCGUUAUAUAUAUAUAU   2200 Target Full Sequence	2.0	PREDICTED: Glycine max fimbrin-2-like (LOC100793464), transcript variant X2, mRNA	fimbrin-2-like(LOC100793464)	coding protein	psRNATarget
XM_006599078.2	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   ||*|||*||||||||||||| targets:2178   AAACCGUUAUAUAUAUAUAU   2197 Target Full Sequence	2.0	PREDICTED: Glycine max fimbrin-2-like (LOC100793464), transcript variant X3, mRNA	fimbrin-2-like(LOC100793464)	coding protein	psRNATarget
XM_003521922.3	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   |||*|*|||||||||||||| targets:1099   AAGACUAUAUAUAUAUAUAU   1118 Target Full Sequence	2.0	PREDICTED: Glycine max ruBisCO-associated protein-like (LOC100799179), mRNA	ruBisCO-associated protein-like(LOC100799179)	coding protein	psRNATarget
NM_001249998.2	ncRNA:20   UUCGG-CUAUAUAUAUAUAUA   1   =|||=-||||||||||||||| targets:967   GAGCUAGAUAUAUAUAUAUAU   987 Target Full Sequence	3.0	Glycine max uncharacterized LOC100527500 (LOC100527500), mRNA	uncharacterized LOC100527500(LOC100527500)	coding protein	psRNATarget
XM_003534051.3	ncRNA:20   UUCGGC-UAUAUAUAUAUAUA   1   =|||=|-|||||||||||||| targets:859   GAGCUGGAUAUAUAUAUAUAU   879 Target Full Sequence	3.0	PREDICTED: Glycine max NAC domain-containing protein 86-like (LOC100788036), mRNA	NAC domain-containing protein 86-like(LOC100788036)	coding protein	psRNATarget
BT092347.1	ncRNA:20   UUCGG-CUAUAUAUAUAUAUA   1   =|||=-||||||||||||||| targets:676   GAGCUAGAUAUAUAUAUAUAU   696 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-10P13 unknown mRNA	NA	coding protein	psRNATarget
XM_014776632.1	ncRNA:20   UUCGG-CUAUAUAUAUAUAUA   1   *|||=-||||||||||||||| targets:1668   UAGCUUGAUAUAUAUAUAUAU   1688 Target Full Sequence	3.0	PREDICTED: Glycine max radial spoke head 10 homolog B-like (LOC102660280), transcript variant X1, mRNA	radial spoke head 10 homolog B-like(LOC102660280)	coding protein	psRNATarget
XM_014776642.1	ncRNA:20   UUCGG-CUAUAUAUAUAUAUA   1   *|||=-||||||||||||||| targets:1660   UAGCUUGAUAUAUAUAUAUAU   1680 Target Full Sequence	3.0	PREDICTED: Glycine max radial spoke head 10 homolog B-like (LOC102660280), transcript variant X11, mRNA	radial spoke head 10 homolog B-like(LOC102660280)	coding protein	psRNATarget
XM_014776636.1	ncRNA:20   UUCGG-CUAUAUAUAUAUAUA   1   *|||=-||||||||||||||| targets:1668   UAGCUUGAUAUAUAUAUAUAU   1688 Target Full Sequence	3.0	PREDICTED: Glycine max radial spoke head 10 homolog B-like (LOC102660280), transcript variant X5, mRNA	radial spoke head 10 homolog B-like(LOC102660280)	coding protein	psRNATarget
XM_014776635.1	ncRNA:20   UUCGG-CUAUAUAUAUAUAUA   1   *|||=-||||||||||||||| targets:1668   UAGCUUGAUAUAUAUAUAUAU   1688 Target Full Sequence	3.0	PREDICTED: Glycine max radial spoke head 10 homolog B-like (LOC102660280), transcript variant X4, mRNA	radial spoke head 10 homolog B-like(LOC102660280)	coding protein	psRNATarget
XM_014763846.1	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   |=|=*||||||||||||||| targets:322   AGGUGGAUAUAUAUAUAUAU   341 Target Full Sequence	3.0	PREDICTED: Glycine max heterogeneous nuclear ribonucleoprotein 1-like (LOC100808084), transcript variant X1, mRNA	heterogeneous nuclear ribonucleoprotein 1-like(LOC100808084)	coding protein	psRNATarget
XM_006590594.2	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   |=|=*||||||||||||||| targets:253   AGGUGGAUAUAUAUAUAUAU   272 Target Full Sequence	3.0	PREDICTED: Glycine max heterogeneous nuclear ribonucleoprotein 1-like (LOC100808084), transcript variant X2, mRNA	heterogeneous nuclear ribonucleoprotein 1-like(LOC100808084)	coding protein	psRNATarget
XM_006590595.2	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   |=|=*||||||||||||||| targets:250   AGGUGGAUAUAUAUAUAUAU   269 Target Full Sequence	3.0	PREDICTED: Glycine max heterogeneous nuclear ribonucleoprotein 1-like (LOC100808084), transcript variant X3, mRNA	heterogeneous nuclear ribonucleoprotein 1-like(LOC100808084)	coding protein	psRNATarget
XM_006595751.2	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   |=|=|*|||||||||||||| targets:1045   AGGUCCAUAUAUAUAUAUAU   1064 Target Full Sequence	3.0	PREDICTED: Glycine max rRNA-processing protein UTP23 homolog (LOC100806716), transcript variant X3, mRNA	rRNA-processing protein UTP23 homolog(LOC100806716)	coding protein	psRNATarget
XM_003545490.3	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   |=|=|*|||||||||||||| targets:1036   AGGUCCAUAUAUAUAUAUAU   1055 Target Full Sequence	3.0	PREDICTED: Glycine max rRNA-processing protein UTP23 homolog (LOC100806716), transcript variant X1, mRNA	rRNA-processing protein UTP23 homolog(LOC100806716)	coding protein	psRNATarget
XM_006595750.2	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   |=|=|*|||||||||||||| targets:1023   AGGUCCAUAUAUAUAUAUAU   1042 Target Full Sequence	3.0	PREDICTED: Glycine max rRNA-processing protein UTP23 homolog (LOC100806716), transcript variant X2, mRNA	rRNA-processing protein UTP23 homolog(LOC100806716)	coding protein	psRNATarget
XM_006595752.2	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   |=|=|*|||||||||||||| targets:1008   AGGUCCAUAUAUAUAUAUAU   1027 Target Full Sequence	3.0	PREDICTED: Glycine max rRNA-processing protein UTP23 homolog (LOC100806716), transcript variant X4, mRNA	rRNA-processing protein UTP23 homolog(LOC100806716)	coding protein	psRNATarget
XM_006595753.2	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   |=|=|*|||||||||||||| targets:998   AGGUCCAUAUAUAUAUAUAU   1017 Target Full Sequence	3.0	PREDICTED: Glycine max rRNA-processing protein UTP23 homolog (LOC100806716), transcript variant X5, mRNA	rRNA-processing protein UTP23 homolog(LOC100806716)	coding protein	psRNATarget
XM_003522346.3	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   ||*==||||||||||||||| targets:1249   AAUUUGAUAUAUAUAUAUAU   1268 Target Full Sequence	3.0	PREDICTED: Glycine max FKBP12-interacting protein of 37 kDa-like (LOC100805415), mRNA	FKBP12-interacting protein of 37 kDa-like(LOC100805415)	coding protein	psRNATarget
XM_006577599.2	ncRNA:20   UU-CGGCUAUAUAUAUAUAUA   1   ||-|||*|||||||||||||| targets:1905   AAUGCCAAUAUAUAUAUAUAU   1925 Target Full Sequence	3.0	PREDICTED: Glycine max phosphatidylinositol 4-kinase gamma 1-like (LOC100782931), mRNA	phosphatidylinositol 4-kinase gamma 1-like(LOC100782931)	coding protein	psRNATarget
XM_003541997.3	ncRNA:20   UUC-GGCUAUAUAUAUAUAUA   1   |||-||*|||||||||||||| targets:1176   AAGUCCAAUAUAUAUAUAUAU   1196 Target Full Sequence	3.0	PREDICTED: Glycine max transcription factor MYB46-like (LOC100799410), mRNA	transcription factor MYB46-like(LOC100799410)	coding protein	psRNATarget
NM_001248846.1	ncRNA:20   UUC-GGCUAUAUAUAUAUAUA   1   |||-||*|||||||||||||| targets:1090   AAGUCCAAUAUAUAUAUAUAU   1110 Target Full Sequence	3.0	Glycine max MYB transcription factor MYB82 (MYB82), mRNA	MYB transcription factor MYB82(MYB82)	coding protein	psRNATarget
DQ822897.1	ncRNA:20   UUC-GGCUAUAUAUAUAUAUA   1   |||-||*|||||||||||||| targets:1090   AAGUCCAAUAUAUAUAUAUAU   1110 Target Full Sequence	3.0	Glycine max MYB transcription factor MYB82 (MYB82) mRNA, complete cds	NA	coding protein	psRNATarget
XM_003546045.3	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   |||=*||||||||||||||* targets:192   AAGUAGAUAUAUAUAUAUAC   211 Target Full Sequence	3.0	PREDICTED: Glycine max monothiol glutaredoxin-S10-like (LOC100811183), mRNA	monothiol glutaredoxin-S10-like(LOC100811183)	coding protein	psRNATarget
XM_003547964.3	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   ***|=||||||||||||||| targets:4036   CUACUGAUAUAUAUAUAUAU   4055 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100794694 (LOC100794694), mRNA	uncharacterized LOC100794694(LOC100794694)	coding protein	psRNATarget
XM_003537746.3	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   =|*|=|=||||||||||||| targets:2444   GAUCUGGUAUAUAUAUAUAU   2463 Target Full Sequence	3.0	PREDICTED: Glycine max ADP-ribosylation factor GTPase-activating protein AGD2-like (LOC100796006), transcript variant X1, mRNA	ADP-ribosylation factor GTPase-activating protein AGD2-like(LOC100796006)	coding protein	psRNATarget
XM_006590774.2	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   =|*|=|=||||||||||||| targets:2378   GAUCUGGUAUAUAUAUAUAU   2397 Target Full Sequence	3.0	PREDICTED: Glycine max ADP-ribosylation factor GTPase-activating protein AGD2-like (LOC100796006), transcript variant X2, mRNA	ADP-ribosylation factor GTPase-activating protein AGD2-like(LOC100796006)	coding protein	psRNATarget
XM_006590775.2	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   =|*|=|=||||||||||||| targets:2321   GAUCUGGUAUAUAUAUAUAU   2340 Target Full Sequence	3.0	PREDICTED: Glycine max ADP-ribosylation factor GTPase-activating protein AGD2-like (LOC100796006), transcript variant X3, mRNA	ADP-ribosylation factor GTPase-activating protein AGD2-like(LOC100796006)	coding protein	psRNATarget
XM_006590776.2	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   =|*|=|=||||||||||||| targets:2315   GAUCUGGUAUAUAUAUAUAU   2334 Target Full Sequence	3.0	PREDICTED: Glycine max ADP-ribosylation factor GTPase-activating protein AGD2-like (LOC100796006), transcript variant X4, mRNA	ADP-ribosylation factor GTPase-activating protein AGD2-like(LOC100796006)	coding protein	psRNATarget
XM_014763956.1	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   =|*|=|=||||||||||||| targets:2106   GAUCUGGUAUAUAUAUAUAU   2125 Target Full Sequence	3.0	PREDICTED: Glycine max ADP-ribosylation factor GTPase-activating protein AGD2-like (LOC100796006), transcript variant X6, mRNA	ADP-ribosylation factor GTPase-activating protein AGD2-like(LOC100796006)	coding protein	psRNATarget
XM_006590777.2	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   =|*|=|=||||||||||||| targets:2093   GAUCUGGUAUAUAUAUAUAU   2112 Target Full Sequence	3.0	PREDICTED: Glycine max ADP-ribosylation factor GTPase-activating protein AGD2-like (LOC100796006), transcript variant X5, mRNA	ADP-ribosylation factor GTPase-activating protein AGD2-like(LOC100796006)	coding protein	psRNATarget
XM_003518596.3	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   =||==*|||||||||||||| targets:851   GAGUUUAUAUAUAUAUAUAU   870 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100780746 (LOC100780746), mRNA	uncharacterized LOC100780746(LOC100780746)	coding protein	psRNATarget
XM_003523927.3	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   ==*|=||||||||||||||| targets:16   GGACUGAUAUAUAUAUAUAU   35 Target Full Sequence	3.0	PREDICTED: Glycine max probable carbohydrate esterase At4g34215 (LOC100814340), transcript variant X1, mRNA	probable carbohydrate esterase At4g34215(LOC100814340)	coding protein	psRNATarget
XM_006577975.2	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   ==*|=||||||||||||||| targets:21   GGACUGAUAUAUAUAUAUAU   40 Target Full Sequence	3.0	PREDICTED: Glycine max probable carbohydrate esterase At4g34215 (LOC100814340), transcript variant X2, mRNA	probable carbohydrate esterase At4g34215(LOC100814340)	coding protein	psRNATarget
XM_003535640.3	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   ***|=||||||||||||||| targets:718   CUUCUGAUAUAUAUAUAUAU   737 Target Full Sequence	3.0	PREDICTED: Glycine max LOB domain-containing protein 38-like (LOC100803780), mRNA	LOB domain-containing protein 38-like(LOC100803780)	coding protein	psRNATarget
XM_014773943.1	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   *=||=*|||||||||||||| targets:2112   UGGCUUAUAUAUAUAUAUAU   2131 Target Full Sequence	3.0	PREDICTED: Glycine max protein TRANSPORT INHIBITOR RESPONSE 1-like (LOC100816241), transcript variant X2, mRNA	protein TRANSPORT INHIBITOR RESPONSE 1-like(LOC100816241)	coding protein	psRNATarget
AK286056.1	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   *=||=*|||||||||||||| targets:2055   UGGCUUAUAUAUAUAUAUAU   2074 Target Full Sequence	3.0	Glycine max cDNA, clone: GMFL01-21-A01	NA	coding protein	psRNATarget
XM_003518845.3	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   *|*==||||||||||||||| targets:1507   CAUUUGAUAUAUAUAUAUAU   1526 Target Full Sequence	3.0	PREDICTED: Glycine max phospholipase A1-Igamma1, chloroplastic-like (LOC100779151), mRNA	phospholipase A1-Igamma1, chloroplastic-like(LOC100779151)	coding protein	psRNATarget
XM_003518844.3	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   *|*==||||||||||||||| targets:1503   CAUUUGAUAUAUAUAUAUAU   1522 Target Full Sequence	3.0	PREDICTED: Glycine max phospholipase A1-Igamma1, chloroplastic (LOC100778615), mRNA	phospholipase A1-Igamma1, chloroplastic(LOC100778615)	coding protein	psRNATarget
AK245494.1	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   *|*==||||||||||||||| targets:1493   CAUUUGAUAUAUAUAUAUAU   1512 Target Full Sequence	3.0	Glycine max cDNA, clone: GMFL01-32-E14	NA	coding protein	psRNATarget
BT096824.1	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   *|**|||||||||||||||| targets:1611   UAUACGAUAUAUAUAUAUAU   1630 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-21A14 unknown mRNA	NA	coding protein	psRNATarget
XM_003525138.3	ncRNA:20   UUCGGCUAUAUAUAUAUAUA   1   *||==*|||||||||||||| targets:834   UAGUUUAUAUAUAUAUAUAU   853 Target Full Sequence	3.0	PREDICTED: Glycine max protein C2-DOMAIN ABA-RELATED 4-like (LOC100775652), mRNA	protein C2-DOMAIN ABA-RELATED 4-like(LOC100775652)	coding protein	psRNATarget