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BaseInfo

ncRNA ID	novel_gma_miR3060
Species	Glycine max
Class	miRNA
Genome position	Chr13:12473064-12473161 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451670
Length	20
Mature sequence(if miRNA)	1 - CUUUCUUUCUUUUUUUGAAC - 20
Stem-loop(if miRNA)	--  U            U   -CA    UUUAUAAUAUAUAUAUAUAUAA   CU UCUUUCUUUUUU GAA   UUUU                      G   || |||||||||||| |||   ||||   GA AGAAAGAAAAGA CUU   AUAG                      A CA  U            -   AAG    AUCAUAGUUAUAUAAAAACAGA
Stem-loop sequence	CUUUCUUUCUUUUUUUGAACAUUUUUUUAUAAUAUAUAUAUAUAUAAGAAGACAAAAAUAUAUUGAUACUAGAUAGAAUUCAGAAAAGAAAGAUAGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003552014.3	ncRNA:20   CAAGUUUUUUUCUUUCUUUC   1   *||||*|||||||||||||| targets:1065   UUUCAUAAAAAGAAAGAAAG   1084 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100802538 (LOC100802538), transcript variant X1, mRNA	uncharacterized LOC100802538(LOC100802538)	coding protein	psRNATarget
NM_001251308.1	ncRNA:20   CAAGUUUUUUUCUUUCUUUC   1   *||||||=|||||||||||| targets:39   AUUCAAAGAAAGAAAGAAAG   58 Target Full Sequence	1.5	Glycine max calmodulin (SCAM-1), mRNA	calmodulin(SCAM-1)	coding protein	psRNATarget
L01430.1	ncRNA:20   CAAGUUUUUUUCUUUCUUUC   1   *||||||=|||||||||||| targets:39   AUUCAAAGAAAGAAAGAAAG   58 Target Full Sequence	1.5	Soybean calmodulin (SCaM-1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_003537418.3	ncRNA:20   CAAGUUUUUUUCUUUCUUUC   1   *||=|||||||||||||||* targets:113   UUUUAAAAAAAGAAAGAAAU   132 Target Full Sequence	2.0	PREDICTED: Glycine max ARF guanine-nucleotide exchange factor GNOM-like (LOC100789674), mRNA	ARF guanine-nucleotide exchange factor GNOM-like(LOC100789674)	coding protein	psRNATarget
XM_003550773.3	ncRNA:20   CAAGUUUUUUUCUUUCUUUC   1   **||=||||||||||||||| targets:178   AAUCGAAAAAAGAAAGAAAG   197 Target Full Sequence	2.0	PREDICTED: Glycine max leghemoglobin reductase-like (LOC100788043), mRNA	leghemoglobin reductase-like(LOC100788043)	coding protein	psRNATarget
AK244860.1	ncRNA:20   CAAGUUUUUUUCUUUCUUUC   1   **||=||||||||||||||| targets:69   AAUCGAAAAAAGAAAGAAAG   88 Target Full Sequence	2.0	Glycine max cDNA, clone: GMFL01-15-G21	NA	coding protein	psRNATarget
XM_003537005.3	ncRNA:20   CAAGUUUUUUUCUUUCUUUC   1   ***||||||||||||||||| targets:27   AAGCAAAAAAAGAAAGAAAG   46 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized protein At1g03900-like (LOC100818018), mRNA	uncharacterized protein At1g03900-like(LOC100818018)	coding protein	psRNATarget
BT098132.1	ncRNA:20   CAAGUUUUUUUCUUUCUUUC   1   ***||||||||||||||||| targets:158   AGACAAAAAAAGAAAGAAAG   177 Target Full Sequence	2.0	Soybean clone JCVI-FLGm-12G7 unknown mRNA	NA	coding protein	psRNATarget
XM_006595640.2	ncRNA:20   CAAGUUUUUUUCUUUCUUUC   1   |||||||||||||=|||||* targets:339   GUUCAAAAAAAGAGAGAAAU   358 Target Full Sequence	2.5	PREDICTED: Glycine max scarecrow-like protein 21 (LOC100779977), mRNA	scarecrow-like protein 21(LOC100779977)	coding protein	psRNATarget
BT093579.1	ncRNA:20   CAAGUUUUUUUCUUUCUUUC   1   |||||||||||||=|||||* targets:278   GUUCAAAAAAAGAGAGAAAU   297 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-17B15 unknown mRNA	NA	coding protein	psRNATarget
XM_006600220.2	ncRNA:20   CAAGUUUUUUUCUUUCUUUC   1   *||=|||||=|||||||||| targets:126   AUUUAAAAAGAGAAAGAAAG   145 Target Full Sequence	2.5	PREDICTED: Glycine max phosphatidylinositol/phosphatidylcholine transfer protein SFH2 (LOC100797194), transcript variant X2, mRNA	phosphatidylinositol/phosphatidylcholine transfer protein SFH2(LOC100797194)	coding protein	psRNATarget
XM_003542886.3	ncRNA:20   CAAGUUUUUUUCUUUCUUUC   1   |||*|||=|||||||||||| targets:15   GUUAAAAGAAAGAAAGAAAG   34 Target Full Sequence	2.5	PREDICTED: Glycine max mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3-like (LOC100789211), mRNA	mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3-like(LOC100789211)	coding protein	psRNATarget
XM_006596108.2	ncRNA:20   CAAGUUUUUUUCUUUCUUUC   1   |||||=||||*||||||||| targets:753   GUUCAGAAAAUGAAAGAAAG   772 Target Full Sequence	2.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g25630-like (LOC100779093), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At5g25630-like(LOC100779093)	coding protein	psRNATarget
XM_006596109.2	ncRNA:20   CAAGUUUUUUUCUUUCUUUC   1   |||||=||||*||||||||| targets:724   GUUCAGAAAAUGAAAGAAAG   743 Target Full Sequence	2.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g25630-like (LOC100779093), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At5g25630-like(LOC100779093)	coding protein	psRNATarget
XM_006598195.2	ncRNA:20   CAAGUUUUUUUCUUUCUUUC   1   |*|||||||=|||||||||| targets:814   GAUCAAAAAGAGAAAGAAAG   833 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100790472 (LOC100790472), transcript variant X1, mRNA	uncharacterized LOC100790472(LOC100790472)	coding protein	psRNATarget
XM_003546835.3	ncRNA:20   CAAGUUUUUUUCUUUCUUUC   1   |*|||||||=|||||||||| targets:813   GAUCAAAAAGAGAAAGAAAG   832 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100790472 (LOC100790472), transcript variant X2, mRNA	uncharacterized LOC100790472(LOC100790472)	coding protein	psRNATarget
XM_006598196.2	ncRNA:20   CAAGUUUUUUUCUUUCUUUC   1   |*|||||||=|||||||||| targets:810   GAUCAAAAAGAGAAAGAAAG   829 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100790472 (LOC100790472), transcript variant X3, mRNA	uncharacterized LOC100790472(LOC100790472)	coding protein	psRNATarget
XM_006598197.2	ncRNA:20   CAAGUUUUUUUCUUUCUUUC   1   |*|||||||=|||||||||| targets:808   GAUCAAAAAGAGAAAGAAAG   827 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100790472 (LOC100790472), transcript variant X4, mRNA	uncharacterized LOC100790472(LOC100790472)	coding protein	psRNATarget
XM_006587332.2	ncRNA:20   CAAGUUUUUUUCUUUCUUUC   1   *|||*||||=|||||||||| targets:1123   CUUCCAAAAGAGAAAGAAAG   1142 Target Full Sequence	2.5	PREDICTED: Glycine max zinc finger CCCH domain-containing protein 13-like (LOC100775559), mRNA	zinc finger CCCH domain-containing protein 13-like(LOC100775559)	coding protein	psRNATarget
XM_003525521.3	ncRNA:20   CAAGUU-UUUUUCUUUCUUUC   1   *|||=|-|||||||||||||| targets:252   CUUCGAGAAAAAGAAAGAAAG   272 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized protein At1g04910-like (LOC100817548), transcript variant X1, mRNA	uncharacterized protein At1g04910-like(LOC100817548)	coding protein	psRNATarget