A ncRNA database for oil producing plants

Search result

BaseInfo

ncRNA ID	novel_gma_miR3059
Species	Glycine max
Class	miRNA
Genome position	Chr13:45778409-45778485 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451670
Length	20
Mature sequence(if miRNA)	1 - UGAGAAAAAAAAGGAAAAAA - 20
Stem-loop(if miRNA)	-- - - GGUUAG AA UGAGAAA AAAAAGG AAAAAAUU AUGA GUGGA \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|G ACUUUUU UUUUUUU UUUUUUAG UACU CACCA UU A A -----A -A
Stem-loop sequence	UGAGAAAAAAAAGGAAAAAAUUGGUUAGAUGAAAGUGGAGACCACAUCAUAGAUUUUUUAUUUUUUUAUUUUUCAUU

Targets Info

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

NM_001255004.1

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|
targets:1382	AUUUUUCCUUUUUUUUUUCA	1401

1.5

Glycine max uncharacterized LOC100815374 (LOC100815374), mRNA

uncharacterized LOC100815374(LOC100815374)

coding protein

psRNATarget

BT097780.1

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|
targets:1382	AUUUUUCCUUUUUUUUUUCA	1401

1.5

Soybean clone JCVI-FLGm-22D17 unknown mRNA

coding protein

psRNATarget

BT095716.1

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\|\|\|
targets:1556	UUUUUUCCUUCUUUUUCUCA	1575

1.5

Soybean clone JCVI-FLGm-25E14 unknown mRNA

coding protein

psRNATarget

NM_001255876.1

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\|\|\|
targets:1556	UUUUUUCCUUCUUUUUCUCA	1575

1.5

Glycine max uncharacterized LOC100804839 (LOC100804839), mRNA

uncharacterized LOC100804839(LOC100804839)

coding protein

psRNATarget

XM_003518367.3

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|*
targets:339	UUUUUUUCUUUUUUUUCUCU	358

2.0

PREDICTED: Glycine max WEB family protein At2g40480-like (LOC100781281), mRNA

WEB family protein At2g40480-like(LOC100781281)

coding protein

psRNATarget

XM_014776353.1

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:61	UUUUUUUUUUUUUUUUCUCA	80

2.5

PREDICTED: Glycine max histone-lysine N-methyltransferase ASHH2-like (LOC100795379), transcript variant X1, mRNA

histone-lysine N-methyltransferase ASHH2-like(LOC100795379)

coding protein

psRNATarget

XM_014776354.1

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:61	UUUUUUUUUUUUUUUUCUCA	80

2.5

PREDICTED: Glycine max histone-lysine N-methyltransferase ASHH2-like (LOC100795379), transcript variant X3, mRNA

histone-lysine N-methyltransferase ASHH2-like(LOC100795379)

coding protein

psRNATarget

XM_006581537.2

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:60	UUUUUUUUUUUUUUUUCUCA	79

2.5

PREDICTED: Glycine max histone-lysine N-methyltransferase ASHH2-like (LOC100795379), transcript variant X4, mRNA

histone-lysine N-methyltransferase ASHH2-like(LOC100795379)

coding protein

psRNATarget

XM_003525394.3

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:606	UUUUUUUUUUUUUUUUCUCA	625

2.5

PREDICTED: Glycine max protein LONGIFOLIA 1-like (LOC100775311), transcript variant X1, mRNA

protein LONGIFOLIA 1-like(LOC100775311)

coding protein

psRNATarget

XM_014775414.1

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:606	UUUUUUUUUUUUUUUUCUCA	625

2.5

PREDICTED: Glycine max protein LONGIFOLIA 1-like (LOC100775311), transcript variant X4, mRNA

protein LONGIFOLIA 1-like(LOC100775311)

coding protein

psRNATarget

XM_006579432.2

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:502	UUUUUUUUUUUUUUUUCUCA	521

2.5

PREDICTED: Glycine max protein LONGIFOLIA 1-like (LOC100775311), transcript variant X2, mRNA

protein LONGIFOLIA 1-like(LOC100775311)

coding protein

psRNATarget

XM_006596056.2

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:4	UUUUUUUUUUUUUUUUCUCA	23

2.5

PREDICTED: Glycine max transcriptional corepressor LEUNIG-like (LOC100779972), transcript variant X2, mRNA

transcriptional corepressor LEUNIG-like(LOC100779972)

coding protein

psRNATarget

BT094710.1

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:3	UUUUUUUUUUUUUUUUCUCA	22

2.5

Soybean clone JCVI-FLGm-18P18 unknown mRNA

coding protein

psRNATarget

XM_006573820.2

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|*
targets:4710	UUUUUUCCUUUUUUUUUUCU	4729

2.5

PREDICTED: Glycine max increased DNA methylation 1-like (LOC102666194), mRNA

increased DNA methylation 1-like(LOC102666194)

coding protein

psRNATarget

BT098218.1

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:7	UUUUUUUUUUUUUUUUCUCA	26

2.5

Soybean clone JCVI-FLGm-16F7 unknown mRNA

coding protein

psRNATarget

BT098063.1

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:3	UUUUUUUUUUUUUUUUCUCA	22

2.5

Soybean clone JCVI-FLGm-11P22 unknown mRNA

coding protein

psRNATarget

BT095000.1

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:5	UUUUUUUUUUUUUUUUCUCA	24

2.5

Soybean clone JCVI-FLGm-6F15 unknown mRNA

coding protein

psRNATarget

BT097945.1

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:3	UUUUUUUUUUUUUUUUCUCA	22

2.5

Soybean clone JCVI-FLGm-11J24 unknown mRNA

coding protein

psRNATarget

BT095852.1

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:7	UUUUUUUUUUUUUUUUCUCA	26

2.5

Soybean clone JCVI-FLGm-15A8 unknown mRNA

coding protein

psRNATarget

BT099426.1

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:1	UUUUUUUUUUUUUUUUCUCA	20

2.5

Soybean clone JCVI-FLGm-13F16 unknown mRNA

coding protein

psRNATarget

NM_001251339.2

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|=\|\|\|
targets:798	UUUUUUUCUUUUUUUUUUCA	817

2.5

Glycine max maturation protein pPM32 (PM32), mRNA

maturation protein pPM32(PM32)

coding protein

psRNATarget

BT094769.1

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:7	UUUUUUUUUUUUUUUUCUCA	26

2.5

Soybean clone JCVI-FLGm-6K17 unknown mRNA

coding protein

psRNATarget

BT099055.1

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:4	UUUUUUUUUUUUUUUUCUCA	23

2.5

Soybean clone JCVI-FLGm-13M8 unknown mRNA

coding protein

psRNATarget

BT095297.1

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:4	UUUUUUUUUUUUUUUUCUCA	23

2.5

Soybean clone JCVI-FLGm-7I21 unknown mRNA

coding protein

psRNATarget

BT098748.1

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:2	UUUUUUUUUUUUUUUUCUCA	21

2.5

Soybean clone JCVI-FLGm-16B4 unknown mRNA

coding protein

psRNATarget

XM_003540300.3

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|*
targets:173	UUUUUUCUUUUUUUUUCUCU	192

2.5

PREDICTED: Glycine max secretory carrier-associated membrane protein 1-like (LOC100820206), mRNA

secretory carrier-associated membrane protein 1-like(LOC100820206)

coding protein

psRNATarget

XM_006585107.2

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	*\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:169	CUUUUUUUUUUUUUUUCUCA	188

2.5

PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase MRH1 (LOC100786591), transcript variant X1, mRNA

probable LRR receptor-like serine/threonine-protein kinase MRH1(LOC100786591)

coding protein

psRNATarget

XM_003532708.3

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	*\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|
targets:169	CUUUUUUUUUUUUUUUCUCA	188

2.5

PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase MRH1 (LOC100786591), transcript variant X2, mRNA

probable LRR receptor-like serine/threonine-protein kinase MRH1(LOC100786591)

coding protein

psRNATarget

XM_014770918.1

ncRNA:20	AAAAAAGGAAAA-AAAAGAGU	1
	\|\|\|\|\|\|\|\|\|\|\|\|-\|\|\|\|\|\|\|\|
targets:66	UUUUUUCCUUUUCUUUUCUCA	86

3.0

PREDICTED: Glycine max uncharacterized LOC100800748 (LOC100800748), transcript variant X1, mRNA

uncharacterized LOC100800748(LOC100800748)

coding protein

psRNATarget

XM_006602969.2

ncRNA:20	AAAAAAGGAAAA-AAAAGAGU	1
	\|\|\|\|\|\|\|\|\|\|\|\|-\|\|\|\|\|\|\|\|
targets:66	UUUUUUCCUUUUCUUUUCUCA	86

3.0

PREDICTED: Glycine max uncharacterized LOC100800748 (LOC100800748), transcript variant X2, mRNA

uncharacterized LOC100800748(LOC100800748)

coding protein

psRNATarget

XM_014770919.1

ncRNA:20	AAAAAAGGAAAA-AAAAGAGU	1
	\|\|\|\|\|\|\|\|\|\|\|\|-\|\|\|\|\|\|\|\|
targets:67	UUUUUUCCUUUUCUUUUCUCA	87

3.0

PREDICTED: Glycine max uncharacterized LOC100800748 (LOC100800748), transcript variant X3, mRNA

uncharacterized LOC100800748(LOC100800748)

coding protein

psRNATarget

XM_003527566.3

ncRNA:20	AA-AAAAGGAAAAAAAAGAGU	1
	\|\|-\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1882	UUCUUUUUCUUUUUUUUCUCA	1902

3.0

PREDICTED: Glycine max endoglucanase 24-like (LOC100814545), mRNA

endoglucanase 24-like(LOC100814545)

coding protein

psRNATarget

XM_003548116.3

ncRNA:20	AAAAAAGGAAAAAAAAGAGU	1
	\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|
targets:94	UUUCUUUCUUUUUUUUCUCU	113

3.0

PREDICTED: Glycine max scarecrow-like protein 8 (LOC100788551), mRNA

scarecrow-like protein 8(LOC100788551)

coding protein

psRNATarget