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BaseInfo

ncRNA ID ath-miR319c
Species Arabidopsis thaliana
Class miRNA
Genome position chr2:17029701-17029899 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 170 - UUGGACUGAAGGGAGCUCCUU - 190
Stem-loop(if miRNA)     UAU        A              U        GAAA      A GG           G   AC    C  UC  AA    C     AG   AAC
UAGA   AGAAGGAG UUCUUUCAGUCCAG CAUGGAUA    AAGAAG G  UAGAAAUAUCU CCG  UCAU CA  CA  CACU GUGGU  AGA   G
||||   |||||||| |||||||||||||| ||||||||    |||||| |  ||||||||||| |||  |||| ||  ||  |||| |||||  |||   A
AUCU   UCUUCCUC AGGGAAGUCAGGUU GUGUCUAU    UUCUUC C  GUUUUUAUAGA GGC  AGUA GU  GU  GUGA CGCCA  UUU   U
    UUU        G              U        ----      - UA           G   GU    A  GU  CA    -     AA   AAA
Stem-loop sequence UAGAUAUAGAAGGAGAUUCUUUCAGUCCAGUCAUGGAUAGAAAAAGAAGAGGGUAGAAAUAUCUGCCGACUCAUCCAUCCAAACACUCGUGGUAGAGAAACGAUAAAUUUAAACCGCAGUGACUGUGUGAAUGAUGCGGGAGAUAUUUUUGAUCCUUCUUUAUCUGUGUUUGGACUGAAGGGAGCUCCUUCUUUUUCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY084306.1
ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1
  *|||=|**|||||||||||||
targets:316   CAGGGGGACCCUUCAGUCCAA   336

3.0 Arabidopsis thaliana clone 10320 mRNA, complete sequence NA coding protein psRNATarget
AY113898.1
ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1
  *|||=|**|||||||||||||
targets:720   UAGGGGGACCCUUCAGUCCAA   740

3.0 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds NA coding protein psRNATarget
AY102141.1
ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1
  *|||=|**|||||||||||||
targets:888   CAGGGGGACCCUUCAGUCCAA   908

3.0 Arabidopsis thaliana AT4g18390/F28J12_50 mRNA, complete cds NA coding protein psRNATarget
AF072691.1
ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1
  *|||=|**|||||||||||||
targets:799   CAGGGGGACCCUUCAGUCCAA   819

3.0 Arabidopsis thaliana putative basic helix-loop-helix DNA binding protein TCP2 (tcp3) mRNA, partial cds NA coding protein psRNATarget
BX827412.1
ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1
  *|||=|**|||||||||||||
targets:949   CAGGGGGACCCUUCAGUCCAA   969

3.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS51ZE11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX813474.1
ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1
  *|||=|**|||||||||||||
targets:935   UAGGGGGACCCUUCAGUCCAA   955

3.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB19ZG04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY057672.1
ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1
  *|||=|**|||||||||||||
targets:1012   UAGGGGGACCCUUCAGUCCAA   1032

3.0 Arabidopsis thaliana At1g30210/F12P21_11 mRNA, complete cds NA coding protein psRNATarget
NM_001084938.1
ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1
  *|||=|**|||||||||||||
targets:1126   CAGGGGGACCCUUCAGUCCAA   1146

3.0 Arabidopsis thaliana TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (TCP2), mRNA TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2(TCP2) coding protein psRNATarget
NM_179399.3
ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1
  *|||=|**|||||||||||||
targets:1032   UAGGGGGACCCUUCAGUCCAA   1052

3.0 Arabidopsis thaliana TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 (TCP24), mRNA TEOSINTE BRANCHED 1, cycloidea, and PCF family 24(TCP24) coding protein psRNATarget
BX827987.1
ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1
  *|||=|**|||||||||||||
targets:1291   CAGGGGGACCCUUCAGUCCAA   1311

3.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH42ZA03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY035008.1
ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1
  *|||=|**|||||||||||||
targets:1131   UAGGGGGACCCUUCAGUCCAA   1151

3.0 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds NA coding protein psRNATarget
BX827630.1
ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1
  *|||=|**|||||||||||||
targets:1300   CAGGGGGACCCUUCAGUCCAA   1320

3.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS87ZF07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_102760.3
ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1
  *|||=|**|||||||||||||
targets:1159   UAGGGGGACCCUUCAGUCCAA   1179

3.0 Arabidopsis thaliana TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 (TCP24), mRNA TEOSINTE BRANCHED 1, cycloidea, and PCF family 24(TCP24) coding protein psRNATarget
AF367292.1
ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1
  *|||=|**|||||||||||||
targets:1291   CAGGGGGACCCUUCAGUCCAA   1311

3.0 Arabidopsis thaliana AT4g18390/F28J12_50 mRNA, complete cds NA coding protein psRNATarget
AF367270.1
ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1
  *|||=|**|||||||||||||
targets:1303   CAGGGGGACCCUUCAGUCCAA   1323

3.0 Arabidopsis thaliana AT4g18390/F28J12_50 mRNA, complete cds NA coding protein psRNATarget
BX826817.1
ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1
  *|||=|**|||||||||||||
targets:1297   CAGGGGGACCCUUCAGUCCAA   1317

3.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB65ZA03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX827992.1
ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1
  *|||=|**|||||||||||||
targets:1380   CAGGGGGACCCUUCAGUCCAA   1400

3.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH42ZD07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_117950.5
ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1
  *|||=|**|||||||||||||
targets:1397   CAGGGGGACCCUUCAGUCCAA   1417

3.0 Arabidopsis thaliana TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (TCP2), mRNA TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2(TCP2) coding protein psRNATarget

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:15258262
"Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis";
Sunkar R, Zhu JK;
Plant Cell. 16:2001-2019(2004).
3 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
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