ncRNA ID | novel_gma_miR3050 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr12:5689227-5689329 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451670 |
Length | 20 |
Mature sequence(if miRNA) | 1 - UUGUUAUUUUAGAUUUUGAA - 20 |
Stem-loop(if miRNA) |
--    --          CU       UU  -CAAA   -A       -     C   CAGA  CUGGAAUGAC  AAUCGAU  UA     AUA  AAAAUGA AUUGU U   ||||  ||||||||||  |||||||  ||     |||  ||||||| |||||   GUUU  GAUUUUAUUG  UUAGCUA  AU     UGU  UUUUACU UAAUA C AA    UA          --       UU  UACUC   AG       A     U |
Stem-loop sequence | CAGACUGGAAUGACCUAAUCGAUUUUACAAAAUAAAAAAUGAAUUGUCUCUAUAAUAUCAUUUUGAUGUCUCAUUAUUAUCGAUUGUUAUUUUAGAUUUUGAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003528649.3 |
|
2.5 | PREDICTED: Glycine max peroxidase 29-like (LOC100797313), mRNA | peroxidase 29-like(LOC100797313) | coding protein | psRNATarget | |||||||||
XM_003554734.3 |
|
3.0 | PREDICTED: Glycine max probable L-gulonolactone oxidase 6 (LOC100801515), mRNA | probable L-gulonolactone oxidase 6(LOC100801515) | coding protein | psRNATarget |