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BaseInfo

ncRNA ID novel_gma_miR3050
Species Glycine max
Class miRNA
Genome position Chr12:5689227-5689329 [-]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 20
Mature sequence(if miRNA) 1 - UUGUUAUUUUAGAUUUUGAA - 20
Stem-loop(if miRNA) --    --          CU       UU  -CAAA   -A       -     C
  CAGA  CUGGAAUGAC  AAUCGAU  UA     AUA  AAAAUGA AUUGU U
  ||||  ||||||||||  |||||||  ||     |||  ||||||| |||||
  GUUU  GAUUUUAUUG  UUAGCUA  AU     UGU  UUUUACU UAAUA C
AA    UA          --       UU  UACUC   AG       A     U
Stem-loop sequence CAGACUGGAAUGACCUAAUCGAUUUUACAAAAUAAAAAAUGAAUUGUCUCUAUAAUAUCAUUUUGAUGUCUCAUUAUUAUCGAUUGUUAUUUUAGAUUUUGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003528649.3
ncRNA:20   AAGUUUUAGAUUUUAUUGUU   1
  *|*|||||=|||||||||||
targets:20   CUAAAAAUUUAAAAUAACAA   39

2.5 PREDICTED: Glycine max peroxidase 29-like (LOC100797313), mRNA peroxidase 29-like(LOC100797313) coding protein psRNATarget
XM_003554734.3
ncRNA:20   AAGUUUUAGAUUUUAUUGUU   1
  ||||=*|||||||||||||*
targets:2096   UUCAGCAUCUAAAAUAACAU   2115

3.0 PREDICTED: Glycine max probable L-gulonolactone oxidase 6 (LOC100801515), mRNA probable L-gulonolactone oxidase 6(LOC100801515) coding protein psRNATarget