Search result

BaseInfo

ncRNA ID	novel_gma_miR3045
Species	Glycine max
Class	miRNA
Genome position	Chr14:47701059-47701128 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451669
Length	20
Mature sequence(if miRNA)	1 - GCAAAAGCUUCUUCUGUUGA - 20
Stem-loop(if miRNA)	---   UAU        G    ----    UUUU   CA    ACA   AGAAGCUU UGCG    CAAA    ACA  U    |||   |||||||| ||||    ||||    |||    UGU   UCUUCGAA ACGU    GUUU    UGU  G AGU   -CU        A    UAAG    --UU   AC
Stem-loop sequence	ACAUAUAGAAGCUUGUGCGCAAAUUUUACACAUGCAUGUUUUUUGGAAUUGCAAAAGCUUCUUCUGUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003531438.3	ncRNA:20   AGUUGUCUUCUUCGAAAACG   1   *||*||||=||||||||||| targets:599   CCAUCAGAGGAAGCUUUUGC   618 Target Full Sequence	2.5	PREDICTED: Glycine max thiosulfate/3-mercaptopyruvate sulfurtransferase 2-like (LOC100798053), mRNA	thiosulfate/3-mercaptopyruvate sulfurtransferase 2-like(LOC100798053)	coding protein	psRNATarget
XM_003552712.3	ncRNA:20   AGUUGUCUUCUUCGAAAACG   1   **|||||||*|||||||||| targets:1373   GAAACAGAACAAGCUUUUGC   1392 Target Full Sequence	2.5	PREDICTED: Glycine max IQ domain-containing protein IQM2-like (LOC100779879), mRNA	IQ domain-containing protein IQM2-like(LOC100779879)	coding protein	psRNATarget
XM_003540182.3	ncRNA:20   AGUUGUCUUCUUCGAAAACG   1   **||||||||||||||*||| targets:21   AAAACAGAAGAAGCUUCUGC   40 Target Full Sequence	2.5	PREDICTED: Glycine max peptidyl-prolyl cis-trans isomerase CYP71-like (LOC100801887), mRNA	peptidyl-prolyl cis-trans isomerase CYP71-like(LOC100801887)	coding protein	psRNATarget
XM_003541549.3	ncRNA:20   AGUUGUCUUCUUCGAAAACG   1   *|||==|||||||||||||* targets:569   ACAAUGGAAGAAGCUUUUGA   588 Target Full Sequence	3.0	PREDICTED: Glycine max cytosolic sulfotransferase 15-like (LOC100789023), mRNA	cytosolic sulfotransferase 15-like(LOC100789023)	coding protein	psRNATarget
XM_003542780.2	ncRNA:20   AGUUGUCUUCUUCGAAAACG   1   *|||==|||||||||||||* targets:582   ACAAUGGAAGAAGCUUUUGA   601 Target Full Sequence	3.0	PREDICTED: Glycine max cytosolic sulfotransferase 15-like (LOC100779412), mRNA	cytosolic sulfotransferase 15-like(LOC100779412)	coding protein	psRNATarget
XM_014765570.1	ncRNA:20   AGUUGUCUUCUUCGAAAACG   1   |***|||||||||||||||| targets:141   UACCCAGAAGAAGCUUUUGC   160 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100792004 (LOC100792004), transcript variant X2, mRNA	uncharacterized LOC100792004(LOC100792004)	coding protein	psRNATarget
XM_014765569.1	ncRNA:20   AGUUGUCUUCUUCGAAAACG   1   |***|||||||||||||||| targets:141   UACCCAGAAGAAGCUUUUGC   160 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100792004 (LOC100792004), transcript variant X1, mRNA	uncharacterized LOC100792004(LOC100792004)	coding protein	psRNATarget
BT094136.1	ncRNA:20   AGUUGUCUUCUUCGAAAACG   1   |***|||||||||||||||| targets:122   UACCCAGAAGAAGCUUUUGC   141 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-18A10 unknown mRNA	NA	coding protein	psRNATarget
XM_006594156.2	ncRNA:20   AGUUGUCUUCUUCGAAAACG   1   |***|||||||||||||||| targets:141   UACCCAGAAGAAGCUUUUGC   160 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100792004 (LOC100792004), transcript variant X3, mRNA	uncharacterized LOC100792004(LOC100792004)	coding protein	psRNATarget
KY399789.1	ncRNA:20   AGUUGUCUUCUUCGAAAACG   1   *=||*=|||||||||||||| targets:1075   AUAAAGGAAGAAGCUUUUGC   1094 Target Full Sequence	3.0	Glycine max isoflavone malonyltransferase IMaT1 (IMaT1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_003556957.3	ncRNA:20   AGUUGUCUUCUUCGAAAACG   1   |***|||||||||||||||| targets:279   UACCCAGAAGAAGCUUUUGC   298 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100789895 (LOC100789895), mRNA	uncharacterized LOC100789895(LOC100789895)	coding protein	psRNATarget
AK245653.1	ncRNA:20   AGUUGUCUUCUUCGAAAACG   1   *=||*=|||||||||||||| targets:1126   AUAAAGGAAGAAGCUUUUGC   1145 Target Full Sequence	3.0	Glycine max cDNA, clone: GMFL01-36-N01	NA	coding protein	psRNATarget
BT094713.1	ncRNA:20   AGUUGUCUUCUUCGAAAACG   1   *||=||*||||||||||||= targets:336   GCAGCACAAGAAGCUUUUGU   355 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-24P20 unknown mRNA	NA	coding protein	psRNATarget
XM_003552532.3	ncRNA:20   AGUUGUCUUCUUCGAAAACG   1   *=||*=|||||||||||||| targets:1202   AUAAAGGAAGAAGCUUUUGC   1221 Target Full Sequence	3.0	PREDICTED: Glycine max phenolic glucoside malonyltransferase 1-like (LOC100814826), mRNA	phenolic glucoside malonyltransferase 1-like(LOC100814826)	coding protein	psRNATarget
XM_006585459.2	ncRNA:20   AGUUGU-CUUCUUCGAAAACG   1   *|||*|-|||||||||||||| targets:997   CCAAGACGAAGAAGCUUUUGC   1017 Target Full Sequence	3.0	PREDICTED: Glycine max phospholipase D alpha 4-like (LOC100812642), transcript variant X3, mRNA	phospholipase D alpha 4-like(LOC100812642)	coding protein	psRNATarget
XM_003532964.3	ncRNA:20   AGUUGU-CUUCUUCGAAAACG   1   *|||*|-|||||||||||||| targets:1011   CCAAGACGAAGAAGCUUUUGC   1031 Target Full Sequence	3.0	PREDICTED: Glycine max phospholipase D alpha 4-like (LOC100812642), transcript variant X2, mRNA	phospholipase D alpha 4-like(LOC100812642)	coding protein	psRNATarget
XM_006585458.2	ncRNA:20   AGUUGU-CUUCUUCGAAAACG   1   *|||*|-|||||||||||||| targets:1028   CCAAGACGAAGAAGCUUUUGC   1048 Target Full Sequence	3.0	PREDICTED: Glycine max phospholipase D alpha 4-like (LOC100812642), transcript variant X1, mRNA	phospholipase D alpha 4-like(LOC100812642)	coding protein	psRNATarget