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BaseInfo

ncRNA ID novel_gma_miR3035
Species Glycine max
Class miRNA
Genome position Chr20:44325546-44325613 [+]
Reference genome Glycine_max_v2.0
Source SRR1451667;SRR1451668;SRR1451679;SRR1451680
Length 20
Mature sequence(if miRNA) 1 - ACAGUCCAUCUUGGCAAAGC - 20
Stem-loop(if miRNA) AC       CU     ----      ---AAA    U
  AGUCCAU  UGGCA    AAGCUA      ACUC C
  |||||||  |||||    ||||||      |||| A
  UCAGGUA  AUCGU    UUCGAU      UGGG A
AC       --     AAGU      CGGUAA    U
Stem-loop sequence ACAGUCCAUCUUGGCAAAGCUAAAAACUCUCAAUGGGUAAUGGCUAGCUUUGAAUGCUAAUGGACUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT092794.1
ncRNA:20   CGAAACGGUUCUACCUGACA   1
  *|||||||||||*||||||*
targets:125   CCUUUGCCAAGAAGGACUGG   144

2.5 Soybean clone JCVI-FLGm-11D2 unknown mRNA NA coding protein psRNATarget
NM_001254076.2
ncRNA:20   CGAAACGGUUCUACCUGACA   1
  *|||||||||||*||||||*
targets:127   CCUUUGCCAAGAAGGACUGG   146

2.5 Glycine max 40S ribosomal protein S3a-like (LOC100805519), mRNA 40S ribosomal protein S3a-like(LOC100805519) coding protein psRNATarget
BT098700.1
ncRNA:20   CGAAACGGUUCUACCUGACA   1
  *|||||||||||*||||||*
targets:129   CCUUUGCCAAGAAGGACUGG   148

2.5 Soybean clone JCVI-FLGm-23I10 unknown mRNA NA coding protein psRNATarget
BT093927.1
ncRNA:20   CGAAACGGUUCUACCUGACA   1
  *|||||||||||*||||||*
targets:206   CCUUUGCCAAGAAGGACUGG   225

2.5 Soybean clone JCVI-FLGm-17N24 unknown mRNA NA coding protein psRNATarget