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BaseInfo

ncRNA ID novel_gma_miR3033
Species Glycine max
Class miRNA
Genome position Chr11:34026819-34026899 [+]
Reference genome Glycine_max_v2.0
Source SRR1451667;SRR1451680
Length 19
Mature sequence(if miRNA) 63 - GGUGUCGUGUCGGUGUCGA - 81
Stem-loop(if miRNA) --        A    G    AGAC  AUUACACUUGUAAUGUC
  GACACCGA CACG ACAC    AC                 U
  |||||||| |||| ||||    ||
  CUGUGGCU GUGC UGUG    GC                 A
AG        -    -    ---G  AUAAUGUAAUAUAUAAA
Stem-loop sequence GACACCGAACACGGACACAGACACAUUACACUUGUAAUGUCUAAAAUAUAUAAUGUAAUACGGGUGUCGUGUCGGUGUCGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003545133.3
ncRNA:19   AGCUGUGGCUGUGCUGUGG   1
  *||||||||||||||||||
targets:1178   CCGACACCGACACGACACC   1196

1.0 PREDICTED: Glycine max probable polygalacturonase At3g15720 (LOC100787282), mRNA probable polygalacturonase At3g15720(LOC100787282) coding protein psRNATarget
XM_014771574.1
ncRNA:19   AGCUGUGGCUGUGCUGUGG   1
  *||||||||||||||||||
targets:64   CCGACACCGACACGACACC   82

1.0 PREDICTED: Glycine max uncharacterized LOC100817255 (LOC100817255), mRNA uncharacterized LOC100817255(LOC100817255) coding protein psRNATarget
XM_006585684.2
ncRNA:19   AGCUGUGGCUGUGCUGUGG   1
  *||||||||||||||||||
targets:215   CCGACACCGACACGACACC   233

1.0 PREDICTED: Glycine max E3 ubiquitin-protein ligase ORTHRUS 2-like (LOC102664187), mRNA E3 ubiquitin-protein ligase ORTHRUS 2-like(LOC102664187) coding protein psRNATarget
XM_006589307.2
ncRNA:19   AGCUGUGGCUGUGCUGUGG   1
  *||||||||||||||||||
targets:662   CCGACACCGACACGACACC   680

1.0 PREDICTED: Glycine max uncharacterized LOC100791948 (LOC100791948), mRNA uncharacterized LOC100791948(LOC100791948) coding protein psRNATarget
XM_003553459.3
ncRNA:19   AGCUGUGGCUGUGCUGUGG   1
  |||||||||||||*|||||
targets:3937   UCGACACCGACACAACACC   3955

1.5 PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At4g08850 (LOC100809137), mRNA probable LRR receptor-like serine/threonine-protein kinase At4g08850(LOC100809137) coding protein psRNATarget
XM_006596348.2
ncRNA:19   AGCUGUGGCUGUGCUGUGG   1
  ||||||||||||||||*||
targets:1057   UCGACACCGACACGACUCC   1075

1.5 PREDICTED: Glycine max uncharacterized LOC100806179 (LOC100806179), mRNA uncharacterized LOC100806179(LOC100806179) coding protein psRNATarget
XM_006594204.2
ncRNA:19   AG-CUGUGGCUGUGCUGUGG   1
  ||-|||||||||||||||||
targets:2306   UCUGACACCGACACGACACC   2325

2.0 PREDICTED: Glycine max histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like (LOC100812749), mRNA histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like(LOC100812749) coding protein psRNATarget
NM_001289209.1
ncRNA:19   AGCUGUGGCUGUGCUGUGG   1
  |=||||||||=||||||||
targets:729   UUGACACCGAUACGACACC   747

2.5 Glycine max 60S ribosomal protein L13a-4-like (LOC100813340), mRNA 60S ribosomal protein L13a-4-like(LOC100813340) coding protein psRNATarget
BT096369.1
ncRNA:19   AGCUGUGGCUGUGCUGUGG   1
  |=||||||||=||||||||
targets:729   UUGACACCGAUACGACACC   747

2.5 Soybean clone JCVI-FLGm-9B8 unknown mRNA NA coding protein psRNATarget
XM_003525712.3
ncRNA:19   AGCUGUGGCUGUGCUGUGG   1
  *|||||=||||||||||||
targets:2546   CCGACAUCGACACGACACC   2564

2.5 PREDICTED: Glycine max protein NSP-INTERACTING KINASE 2-like (LOC100779591), mRNA protein NSP-INTERACTING KINASE 2-like(LOC100779591) coding protein psRNATarget
XM_003530731.3
ncRNA:19   AGCUGUGGCUGUGCUGUGG   1
  *|||||=||||||||||||
targets:1981   CCGACAUCGACACGACACC   1999

2.5 PREDICTED: Glycine max beta-(1,2)-xylosyltransferase-like (LOC100816008), mRNA beta-(1,2)-xylosyltransferase-like(LOC100816008) coding protein psRNATarget
XM_014773491.1
ncRNA:19   AGCUGUGGCUGUGCUGUGG   1
  *||||||||||||||=|||
targets:736   CCGACACCGACACGAUACC   754

2.5 PREDICTED: Glycine max clustered mitochondria protein-like (LOC106798035), mRNA clustered mitochondria protein-like(LOC106798035) coding protein psRNATarget
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