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BaseInfo

ncRNA ID novel_gma_miR3031
Species Glycine max
Class miRNA
Genome position Chr14:47701058-47701129 [-]
Reference genome Glycine_max_v2.0
Source SRR1451667;SRR1451668;SRR1451672
Length 20
Mature sequence(if miRNA) 1 - CAAAAGCUUCUUCUGUUGAC - 20
Stem-loop(if miRNA) ---C   UAU        G    ----    UUUU   CA
    ACA   AGAAGCUU UGCG    CAAA    ACA  U
    |||   |||||||| ||||    ||||    |||
    UGU   UCUUCGAA ACGU    GUUU    UGU  G
CAGU   -CU        A    UAAG    --UU   AC
Stem-loop sequence CACAUAUAGAAGCUUGUGCGCAAAUUUUACACAUGCAUGUUUUUUGGAAUUGCAAAAGCUUCUUCUGUUGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014764194.1
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  |||||=|||||||*||||||
targets:444   GUCAAUAGAAGAAUCUUUUG   463

2.5 PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X9, mRNA COX assembly mitochondrial protein 2 homolog(LOC100789163) coding protein psRNATarget
XM_006591237.2
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  |||||=|||||||*||||||
targets:456   GUCAAUAGAAGAAUCUUUUG   475

2.5 PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X8, mRNA COX assembly mitochondrial protein 2 homolog(LOC100789163) coding protein psRNATarget
XM_006591232.2
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  |||||=|||||||*||||||
targets:481   GUCAAUAGAAGAAUCUUUUG   500

2.5 PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X3, mRNA COX assembly mitochondrial protein 2 homolog(LOC100789163) coding protein psRNATarget
XM_006591234.2
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  |||||=|||||||*||||||
targets:643   GUCAAUAGAAGAAUCUUUUG   662

2.5 PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X4, mRNA COX assembly mitochondrial protein 2 homolog(LOC100789163) coding protein psRNATarget
XM_006591233.2
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  |||||=|||||||*||||||
targets:648   GUCAAUAGAAGAAUCUUUUG   667

2.5 PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X2, mRNA COX assembly mitochondrial protein 2 homolog(LOC100789163) coding protein psRNATarget
XM_014764193.1
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  |||||=|||||||*||||||
targets:693   GUCAAUAGAAGAAUCUUUUG   712

2.5 PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X7, mRNA COX assembly mitochondrial protein 2 homolog(LOC100789163) coding protein psRNATarget
XM_006591236.2
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  |||||=|||||||*||||||
targets:704   GUCAAUAGAAGAAUCUUUUG   723

2.5 PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X5, mRNA COX assembly mitochondrial protein 2 homolog(LOC100789163) coding protein psRNATarget
XM_003538317.3
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  |||||=|||||||*||||||
targets:725   GUCAAUAGAAGAAUCUUUUG   744

2.5 PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X1, mRNA COX assembly mitochondrial protein 2 homolog(LOC100789163) coding protein psRNATarget
XM_006591235.2
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  |||||=|||||||*||||||
targets:737   GUCAAUAGAAGAAUCUUUUG   756

2.5 PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X6, mRNA COX assembly mitochondrial protein 2 homolog(LOC100789163) coding protein psRNATarget
BT091018.1
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  *||||=|||||*||||||||
targets:459   AUCAAUAGAAGCAGCUUUUG   478

2.5 Soybean clone JCVI-FLGm-24P24 unknown mRNA NA coding protein psRNATarget
AK243719.1
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  *||||=|||||*||||||||
targets:458   AUCAAUAGAAGCAGCUUUUG   477

2.5 Glycine max cDNA, clone: GMFL01-01-B03 NA coding protein psRNATarget
NM_001250841.2
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  *||||=|||||*||||||||
targets:539   AUCAAUAGAAGCAGCUUUUG   558

2.5 Glycine max uncharacterized LOC100500163 (LOC100500163), mRNA uncharacterized LOC100500163(LOC100500163) coding protein psRNATarget
AK244008.1
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  *||||=|||||*||||||||
targets:533   AUCAAUAGAAGCAGCUUUUG   552

2.5 Glycine max cDNA, clone: GMFL01-01-N14 NA coding protein psRNATarget
NM_001255642.2
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  *||||=|||||*||||||||
targets:580   AUCAAUAGAAGCAGCUUUUG   599

2.5 Glycine max uncharacterized LOC100806315 (LOC100806315), mRNA uncharacterized LOC100806315(LOC100806315) coding protein psRNATarget
BT093493.1
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  *||||=|||||*||||||||
targets:582   AUCAAUAGAAGCAGCUUUUG   601

2.5 Soybean clone JCVI-FLGm-17I20 unknown mRNA NA coding protein psRNATarget
XM_003553180.3
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  ||||*|||||||*|||||||
targets:991   GUCAUCAGAAGAUGCUUUUG   1010

2.5 PREDICTED: Glycine max DEAD-box ATP-dependent RNA helicase 22-like (LOC100789323), mRNA DEAD-box ATP-dependent RNA helicase 22-like(LOC100789323) coding protein psRNATarget
XM_003530613.3
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  ||||*|||||||*|||||||
targets:1015   GUCAUCAGAAGAUGCUUUUG   1034

2.5 PREDICTED: Glycine max DEAD-box ATP-dependent RNA helicase 22-like (LOC100780518), transcript variant X4, mRNA DEAD-box ATP-dependent RNA helicase 22-like(LOC100780518) coding protein psRNATarget
XM_006585914.2
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  ||||*|||||||*|||||||
targets:1022   GUCAUCAGAAGAUGCUUUUG   1041

2.5 PREDICTED: Glycine max DEAD-box ATP-dependent RNA helicase 22-like (LOC100780518), transcript variant X3, mRNA DEAD-box ATP-dependent RNA helicase 22-like(LOC100780518) coding protein psRNATarget
XM_014779329.1
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  ||||*|||||||*|||||||
targets:1022   GUCAUCAGAAGAUGCUUUUG   1041

2.5 PREDICTED: Glycine max DEAD-box ATP-dependent RNA helicase 22-like (LOC100780518), transcript variant X1, mRNA DEAD-box ATP-dependent RNA helicase 22-like(LOC100780518) coding protein psRNATarget
XM_014779330.1
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  ||||*|||||||*|||||||
targets:1022   GUCAUCAGAAGAUGCUUUUG   1041

2.5 PREDICTED: Glycine max DEAD-box ATP-dependent RNA helicase 22-like (LOC100780518), transcript variant X2, mRNA DEAD-box ATP-dependent RNA helicase 22-like(LOC100780518) coding protein psRNATarget
XM_003541549.3
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  |*|||==|||||||||||||
targets:568   GACAAUGGAAGAAGCUUUUG   587

3.0 PREDICTED: Glycine max cytosolic sulfotransferase 15-like (LOC100789023), mRNA cytosolic sulfotransferase 15-like(LOC100789023) coding protein psRNATarget
XM_003542780.2
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  |*|||==|||||||||||||
targets:581   GACAAUGGAAGAAGCUUUUG   600

3.0 PREDICTED: Glycine max cytosolic sulfotransferase 15-like (LOC100779412), mRNA cytosolic sulfotransferase 15-like(LOC100779412) coding protein psRNATarget
NM_001251183.1
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  *||*=||||||||||||||*
targets:813   AUCUGCAGAAGAAGCUUUUA   832

3.0 Glycine max stress-induced receptor-like kinase (LOC100305367), mRNA stress-induced receptor-like kinase(LOC100305367) coding protein psRNATarget
EU888327.1
ncRNA:20   CAGUUGUCUUCUUCGAAAAC   1
  *||*=||||||||||||||*
targets:813   AUCUGCAGAAGAAGCUUUUA   832

3.0 Glycine max clone 8070618 stress-induced receptor-like kinase mRNA, complete cds NA coding protein psRNATarget
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