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BaseInfo

ncRNA ID novel_gma_miR3015
Species Glycine max
Class miRNA
Genome position Chr20:29414136-29414238 [-]
Reference genome Glycine_max_v2.0
Source SRR1451666
Length 20
Mature sequence(if miRNA) 84 - UUCUCUCUCUAGGAUUCGAC - 103
Stem-loop(if miRNA) --U     C  -   GA    A AAUGG    -C   CCC     ----U   AAA
   UCUCU UC UAG  UUCG C     UGGC  GCU   UCGCC     CGC   G
   ||||| || |||  |||| |     ||||  |||   |||||     |||   A
   AGAGA AG AUC  GAGC G     GCCG  CGA   AGCGG     GUG   G
GGU     -  U   AC    A GACGA    CU   ---     UACAU   CAA
Stem-loop sequence UUCUCUCUCUAGGAUUCGACAAUGGUGGCCGCUCCCUCGCCUCGCAAAGAGAACGUGUACAUGGCGAAGCUCGCCGAGCAGGACGAGCACUAUGAAGAGAUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003534506.3
ncRNA:20   CAGCUUAGGAUCUCUCUCUU   1
  *|||=||=||||||||||||
targets:266   UUCGGAUUCUAGAGAGAGAA   285

2.5 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100805894), transcript variant X1, mRNA ATP-dependent helicase BRM-like(LOC100805894) coding protein psRNATarget
XM_006602461.2
ncRNA:20   CAGCUUAGGAUCUCUCUCUU   1
  *||*|||=||||||||||||
targets:299   UUCAAAUUCUAGAGAGAGAA   318

2.5 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X10, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_014770822.1
ncRNA:20   CAGCUUAGGAUCUCUCUCUU   1
  *||*|||=||||||||||||
targets:300   UUCAAAUUCUAGAGAGAGAA   319

2.5 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X11, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602455.2
ncRNA:20   CAGCUUAGGAUCUCUCUCUU   1
  *||*|||=||||||||||||
targets:298   UUCAAAUUCUAGAGAGAGAA   317

2.5 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X2, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_014770820.1
ncRNA:20   CAGCUUAGGAUCUCUCUCUU   1
  *||*|||=||||||||||||
targets:298   UUCAAAUUCUAGAGAGAGAA   317

2.5 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X3, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602460.2
ncRNA:20   CAGCUUAGGAUCUCUCUCUU   1
  *||*|||=||||||||||||
targets:297   UUCAAAUUCUAGAGAGAGAA   316

2.5 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X9, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602459.2
ncRNA:20   CAGCUUAGGAUCUCUCUCUU   1
  *||*|||=||||||||||||
targets:298   UUCAAAUUCUAGAGAGAGAA   317

2.5 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X8, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602458.2
ncRNA:20   CAGCUUAGGAUCUCUCUCUU   1
  *||*|||=||||||||||||
targets:297   UUCAAAUUCUAGAGAGAGAA   316

2.5 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X7, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602454.2
ncRNA:20   CAGCUUAGGAUCUCUCUCUU   1
  *||*|||=||||||||||||
targets:298   UUCAAAUUCUAGAGAGAGAA   317

2.5 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X1, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_014770821.1
ncRNA:20   CAGCUUAGGAUCUCUCUCUU   1
  *||*|||=||||||||||||
targets:298   UUCAAAUUCUAGAGAGAGAA   317

2.5 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X6, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602456.2
ncRNA:20   CAGCUUAGGAUCUCUCUCUU   1
  *||*|||=||||||||||||
targets:298   UUCAAAUUCUAGAGAGAGAA   317

2.5 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X4, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602457.2
ncRNA:20   CAGCUUAGGAUCUCUCUCUU   1
  *||*|||=||||||||||||
targets:298   UUCAAAUUCUAGAGAGAGAA   317

2.5 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X5, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
BT098160.1
ncRNA:20   CAGCUUAGGAUCUCUCUCUU   1
  |**||||||||||||||||=
targets:1223   GGGGAAUCCUAGAGAGAGAG   1242

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