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BaseInfo

ncRNA ID novel_gma_miR3003
Species Glycine max
Class miRNA
Genome position Chr18:7573297-7573416 [-]
Reference genome Glycine_max_v2.0
Source SRR1451666
Length 21
Mature sequence(if miRNA) 1 - GAAGAAGAAGAAAACAAGAAA - 21
Stem-loop(if miRNA) --      --    G      AUG C       C   G     AAAAAAUCUG     G  UU
  UCUUGU  UCUU UUUCUU   U UUUCAGA UUU UGUAA          UUUGA UU  A
  ||||||  |||| ||||||   | ||||||| ||| |||||          ||||| ||  U
  AGAACA  AGAA GAAGAA   A AAAGUUU AAA ACGUU          AAAUU AA  U
AA      AA    -      -GA A       -   G     --GAAAAAAA     G  CC
Stem-loop sequence UCUUGUUCUUGUUUCUUAUGUCUUUCAGACUUUGUGUAAAAAAAAUCUGUUUGAGUUUUAUUCCAAGUUAAAAAAAAAAGUUGCAGAAAUUUGAAAAAAGAAGAAGAAGAAAACAAGAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003519131.3
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  ||||*||||||||||||||||
targets:157   UUUCAUGUUUUCUUCUUCUUC   177

1.0 PREDICTED: Glycine max uncharacterized protein At1g04910-like (LOC100800040), transcript variant X1, mRNA uncharacterized protein At1g04910-like(LOC100800040) coding protein psRNATarget
XM_014769299.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  |||||||*|||||||||||||
targets:135   UUUCUUGCUUUCUUCUUCUUC   155

1.0 PREDICTED: Glycine max uncharacterized LOC100527710 (LOC100527710), transcript variant X1, mRNA uncharacterized LOC100527710(LOC100527710) coding protein psRNATarget
XM_014769300.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  |||||||*|||||||||||||
targets:117   UUUCUUGCUUUCUUCUUCUUC   137

1.0 PREDICTED: Glycine max uncharacterized LOC100527710 (LOC100527710), transcript variant X2, mRNA uncharacterized LOC100527710(LOC100527710) coding protein psRNATarget
XM_006600092.2
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  |||||||*|||||||||||||
targets:109   UUUCUUGCUUUCUUCUUCUUC   129

1.0 PREDICTED: Glycine max uncharacterized LOC100527710 (LOC100527710), transcript variant X3, mRNA uncharacterized LOC100527710(LOC100527710) coding protein psRNATarget
BT092576.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  |||||||*|||||||||||||
targets:21   UUUCUUGCUUUCUUCUUCUUC   41

1.0 Soybean clone JCVI-FLGm-11C16 unknown mRNA NA coding protein psRNATarget
NM_001249368.2
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  |||||||*|||||||||||||
targets:19   UUUCUUGCUUUCUUCUUCUUC   39

1.0 Glycine max uncharacterized LOC100527710 (LOC100527710), mRNA uncharacterized LOC100527710(LOC100527710) coding protein psRNATarget
XM_014765636.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  *||||*|||||||||||||||
targets:584   CUUCUAGUUUUCUUCUUCUUC   604

1.0 PREDICTED: Glycine max serine/threonine-protein kinase HT1-like (LOC100778344), mRNA serine/threonine-protein kinase HT1-like(LOC100778344) coding protein psRNATarget
XM_006582453.2
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  *|||||*||||||||||||||
targets:190   AUUCUUUUUUUCUUCUUCUUC   210

1.0 PREDICTED: Glycine max probable glycosyltransferase At5g03795 (LOC100781767), mRNA probable glycosyltransferase At5g03795(LOC100781767) coding protein psRNATarget
BT094216.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  *|||||*||||||||||||||
targets:84   CUUCUUCUUUUCUUCUUCUUC   104

1.0 Soybean clone JCVI-FLGm-18I6 unknown mRNA NA coding protein psRNATarget
NM_001254096.2
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  *|||||*||||||||||||||
targets:82   CUUCUUCUUUUCUUCUUCUUC   102

1.0 Glycine max GDT1-like protein 1, chloroplastic-like (LOC100809618), mRNA GDT1-like protein 1, chloroplastic-like(LOC100809618) coding protein psRNATarget
NM_001248182.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  *||||*|||||||||||||||
targets:390   AUUCUCGUUUUCUUCUUCUUC   410

1.0 Glycine max uncharacterized LOC100527114 (LOC100527114), mRNA uncharacterized LOC100527114(LOC100527114) coding protein psRNATarget
BT091932.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  *||||*|||||||||||||||
targets:390   AUUCUCGUUUUCUUCUUCUUC   410

1.0 Soybean clone JCVI-FLGm-9M1 unknown mRNA NA coding protein psRNATarget
BT094720.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  *|||||||*||||||||||||
targets:761   AUUCUUGUCUUCUUCUUCUUC   781

1.5 Soybean clone JCVI-FLGm-6E13 unknown mRNA NA coding protein psRNATarget
XM_006586977.2
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  |||=||*||||||||||||||
targets:208   UUUUUUUUUUUCUUCUUCUUC   228

2.0 PREDICTED: Glycine max uncharacterized LOC100814801 (LOC100814801), transcript variant X1, mRNA uncharacterized LOC100814801(LOC100814801) coding protein psRNATarget
XM_014768087.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  |||=||*||||||||||||||
targets:414   UUUUUUUUUUUCUUCUUCUUC   434

2.0 PREDICTED: Glycine max lateral signaling target protein 2 homolog (LOC100779988), transcript variant X1, mRNA lateral signaling target protein 2 homolog(LOC100779988) coding protein psRNATarget
XM_003545913.3
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  |||=||*||||||||||||||
targets:416   UUUUUUUUUUUCUUCUUCUUC   436

2.0 PREDICTED: Glycine max lateral signaling target protein 2 homolog (LOC100779988), transcript variant X2, mRNA lateral signaling target protein 2 homolog(LOC100779988) coding protein psRNATarget
XM_003555650.3
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  |||||||*||||||||||||=
targets:538   UUUCUUGCUUUCUUCUUCUUU   558

2.0 PREDICTED: Glycine max 65-kDa microtubule-associated protein 6 (LOC100799043), transcript variant X1, mRNA 65-kDa microtubule-associated protein 6(LOC100799043) coding protein psRNATarget
XM_003534639.3
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  |||||||*||||||||||||=
targets:400   UUUCUUGCUUUCUUCUUCUUU   420

2.0 PREDICTED: Glycine max 65-kDa microtubule-associated protein 6-like (LOC100787868), mRNA 65-kDa microtubule-associated protein 6-like(LOC100787868) coding protein psRNATarget
XM_006574239.2
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  |||=||*||||||||||||||
targets:1829   UUUUUUUUUUUCUUCUUCUUC   1849

2.0 PREDICTED: Glycine max WAT1-related protein At5g47470-like (LOC100814597), transcript variant X2, mRNA WAT1-related protein At5g47470-like(LOC100814597) coding protein psRNATarget
XM_014768194.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  |||=||*||||||||||||||
targets:178   UUUUUUUUUUUCUUCUUCUUC   198

2.0 PREDICTED: Glycine max serine/threonine-protein kinase HT1 (LOC100790126), transcript variant X1, mRNA serine/threonine-protein kinase HT1(LOC100790126) coding protein psRNATarget
XM_003546006.3
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  |||=||*||||||||||||||
targets:176   UUUUUUUUUUUCUUCUUCUUC   196

2.0 PREDICTED: Glycine max serine/threonine-protein kinase HT1 (LOC100790126), transcript variant X2, mRNA serine/threonine-protein kinase HT1(LOC100790126) coding protein psRNATarget
BT090376.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  |||=||*||||||||||||||
targets:687   UUUUUUCUUUUCUUCUUCUUC   707

2.0 Soybean clone JCVI-FLGm-4G12 unknown mRNA NA coding protein psRNATarget
NM_001250154.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  |||=||*||||||||||||||
targets:687   UUUUUUCUUUUCUUCUUCUUC   707

2.0 Glycine max uncharacterized LOC100306327 (LOC100306327), mRNA uncharacterized LOC100306327(LOC100306327) coding protein psRNATarget
XM_014763713.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  ||||||*|||||||||||||*
targets:460   UUUCUUUUUUUCUUCUUCUUA   480

2.0 PREDICTED: Glycine max uncharacterized LOC100799187 (LOC100799187), transcript variant X1, mRNA uncharacterized LOC100799187(LOC100799187) coding protein psRNATarget
XM_014763714.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  ||||||*|||||||||||||*
targets:461   UUUCUUUUUUUCUUCUUCUUA   481

2.0 PREDICTED: Glycine max uncharacterized LOC100799187 (LOC100799187), transcript variant X2, mRNA uncharacterized LOC100799187(LOC100799187) coding protein psRNATarget
XM_014779389.1
ncRNA:21   AAAGAA-CAAAAGAAGAAGAAG   1
  |*||||-|||||||||||||||
targets:90   UCUCUUAGUUUUCUUCUUCUUC   111

2.0 PREDICTED: Glycine max zinc finger BED domain-containing protein RICESLEEPER 2-like (LOC106799808), mRNA zinc finger BED domain-containing protein RICESLEEPER 2-like(LOC106799808) coding protein psRNATarget
XM_003523699.3
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  ||||||||||||||=|||||=
targets:3323   UUUCUUGUUUUCUUUUUCUUU   3343

2.5 PREDICTED: Glycine max probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 (LOC100776180), mRNA probably inactive leucine-rich repeat receptor-like protein kinase At2g25790(LOC100776180) coding protein psRNATarget
XM_003539579.3
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  ||||||*||||=|||||||||
targets:475   UUUCUUCUUUUUUUCUUCUUC   495

2.5 PREDICTED: Glycine max pumilio homolog 2-like (LOC100787039), transcript variant X1, mRNA pumilio homolog 2-like(LOC100787039) coding protein psRNATarget
XM_003521918.3
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  *||=|||||||=|||||||||
targets:1303   AUUUUUGUUUUUUUCUUCUUC   1323

2.5 PREDICTED: Glycine max auxin-responsive protein SAUR36 (LOC100796005), mRNA auxin-responsive protein SAUR36(LOC100796005) coding protein psRNATarget
XM_014762202.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  *|||||||||||||=|||||=
targets:714   CUUCUUGUUUUCUUUUUCUUU   734

2.5 PREDICTED: Glycine max protein N-lysine methyltransferase METTL21A-like (LOC100793133), mRNA protein N-lysine methyltransferase METTL21A-like(LOC100793133) coding protein psRNATarget
XM_014775667.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  *||=||||||||||=||||||
targets:1227   GUUUUUGUUUUCUUUUUCUUC   1247

2.5 PREDICTED: Glycine max putative hydrolase C777.06c (LOC100786167), transcript variant X1, mRNA putative hydrolase C777.06c(LOC100786167) coding protein psRNATarget
XM_003549726.3
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  ||||||*|||||||=||||||
targets:11   UUUCUUUUUUUCUUUUUCUUC   31

2.5 PREDICTED: Glycine max uncharacterized LOC100776471 (LOC100776471), transcript variant X2, mRNA uncharacterized LOC100776471(LOC100776471) coding protein psRNATarget
XM_014770160.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  ||||||*|||||||=||||||
targets:2   UUUCUUUUUUUCUUUUUCUUC   22

2.5 PREDICTED: Glycine max uncharacterized LOC100776471 (LOC100776471), transcript variant X3, mRNA uncharacterized LOC100776471(LOC100776471) coding protein psRNATarget
XM_003549117.3
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  |||||||||||*||||||||*
targets:218   UUUCUUGUUUUGUUCUUCUUG   238

2.5 PREDICTED: Glycine max receptor-like protein kinase HSL1 (LOC100813894), mRNA receptor-like protein kinase HSL1(LOC100813894) coding protein psRNATarget
XM_014775314.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  *||||||||||||||||=||*
targets:1200   CUUCUUGUUUUCUUCUUUUUG   1220

2.5 PREDICTED: Glycine max uncharacterized LOC100527687 (LOC100527687), transcript variant X2, mRNA uncharacterized LOC100527687(LOC100527687) coding protein psRNATarget
XM_014775313.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  *||||||||||||||||=||*
targets:1156   CUUCUUGUUUUCUUCUUUUUG   1176

2.5 PREDICTED: Glycine max uncharacterized LOC100527687 (LOC100527687), transcript variant X1, mRNA uncharacterized LOC100527687(LOC100527687) coding protein psRNATarget
AK244687.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  *||||||||||||||||=||*
targets:1122   CUUCUUGUUUUCUUCUUUUUG   1142

2.5 Glycine max cDNA, clone: GMFL01-10-K07 NA coding protein psRNATarget
NM_001249058.2
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  *||||||||||||||||=||*
targets:1133   CUUCUUGUUUUCUUCUUUUUG   1153

2.5 Glycine max vesicle-associated protein (LOC100527687), mRNA uncharacterized LOC100527687(LOC100527687) coding protein psRNATarget
XM_014770161.1
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  ||||||*|||||||=||||||
targets:2   UUUCUUUUUUUCUUUUUCUUC   22

2.5 PREDICTED: Glycine max uncharacterized LOC100776471 (LOC100776471), transcript variant X4, mRNA uncharacterized LOC100776471(LOC100776471) coding protein psRNATarget
XM_003548147.3
ncRNA:21   AAAGAACAA-AAGAAGAAGAAG   1
  *||||||||-||||||||||||
targets:544   CUUCUUGUUCUUCUUCUUCUUC   565

3.0 PREDICTED: Glycine max transcription factor MYC2-like (LOC100804965), mRNA transcription factor MYC2-like(LOC100804965) coding protein psRNATarget
XM_003527733.3
ncRNA:21   AAAGAACAAAA-GAAGAAGAAG   1
  *||||||||||-||||||||||
targets:278   CUUCUUGUUUUUCUUCUUCUUC   299

3.0 PREDICTED: Glycine max probable receptor-like protein kinase At1g80640 (LOC100784795), transcript variant X1, mRNA probable receptor-like protein kinase At1g80640(LOC100784795) coding protein psRNATarget
XM_006581273.2
ncRNA:21   AAAGAACAAAA-GAAGAAGAAG   1
  *||||||||||-||||||||||
targets:278   CUUCUUGUUUUUCUUCUUCUUC   299

3.0 PREDICTED: Glycine max probable receptor-like protein kinase At1g80640 (LOC100784795), transcript variant X2, mRNA probable receptor-like protein kinase At1g80640(LOC100784795) coding protein psRNATarget
AK245956.1
ncRNA:21   AAAGA---ACAAAAGAAGAAGAAG   1
  *||||---||||||||||||||||
targets:315   GUUCUCUCUGUUUUCUUCUUCUUC   338

3.0 Glycine max cDNA, clone: GMFL01-47-C07 NA coding protein psRNATarget
BT093715.1
ncRNA:21   AAAGAACAA-AAGAAGAAGAAG   1
  *||||||||-||||||||||||
targets:403   CUUCUUGUUCUUCUUCUUCUUC   424

3.0 Soybean clone JCVI-FLGm-17N15 unknown mRNA NA coding protein psRNATarget
NM_001249118.1
ncRNA:21   AAAGAACAAA-AGAAGAAGAAG   1
  *|||||||||-|||||||||||
targets:387   CUUCUUGUUUCUCUUCUUCUUC   408

3.0 Glycine max uncharacterized LOC100306507 (LOC100306507), mRNA uncharacterized LOC100306507(LOC100306507) coding protein psRNATarget
XM_014762318.1
ncRNA:21   AAAGA---ACAAAAGAAGAAGAAG   1
  *||||---||||||||||||||||
targets:75   GUUCUCUCUGUUUUCUUCUUCUUC   98

3.0 PREDICTED: Glycine max probable methyltransferase PMT20 (LOC100811384), transcript variant X2, mRNA probable methyltransferase PMT20(LOC100811384) coding protein psRNATarget
XM_003532335.3
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  |||=||*|||||||||||||=
targets:2943   UUUUUUUUUUUCUUCUUCUUU   2963

3.0 PREDICTED: Glycine max chaperone protein ClpC, chloroplastic-like (LOC100795228), mRNA chaperone protein ClpC, chloroplastic-like(LOC100795228) coding protein psRNATarget
XM_003552135.3
ncRNA:21   AAAGAA-CAAAAGAAGAAGAAG   1
  |||*||-|||||||||||||||
targets:2405   UUUGUUAGUUUUCUUCUUCUUC   2426

3.0 PREDICTED: Glycine max auxin response factor 9-like (LOC100780060), transcript variant X1, mRNA auxin response factor 9-like(LOC100780060) coding protein psRNATarget
XM_006574292.2
ncRNA:21   AAAGAACAAAAGAAGAAGAAG   1
  |||=||*|||||||||||||=
targets:1173   UUUUUUUUUUUCUUCUUCUUU   1193

3.0 PREDICTED: Glycine max uncharacterized LOC100526921 (LOC100526921), transcript variant X1, mRNA uncharacterized LOC100526921(LOC100526921) coding protein psRNATarget
XM_006602539.2
ncRNA:21   AAAGAA-CAAAAGAAGAAGAAG   1
  |||*||-|||||||||||||||
targets:1889   UUUGUUAGUUUUCUUCUUCUUC   1910

3.0 PREDICTED: Glycine max auxin response factor 9-like (LOC100780060), transcript variant X2, mRNA auxin response factor 9-like(LOC100780060) coding protein psRNATarget
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