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BaseInfo

ncRNA ID novel_gma_miR3002
Species Glycine max
Class miRNA
Genome position Chr17:14288557-14288634 [-]
Reference genome Glycine_max_v2.0
Source SRR1451666;SRR1451679;SRR1451680;SRR1451681
Length 20
Mature sequence(if miRNA) 1 - UGUGUGUGUUGUGUGUGUGU - 20
Stem-loop(if miRNA) --  UUU  UG                          GU
  AC   CA  ACAUAUAUAUAUAUAUAUAUAUAUAU  G
  ||   ||  ||||||||||||||||||||||||||
  UG   GU  UGUGUGUGUGUGUGUGUGUGUGUGUG  U
UG  UGU  GU                          UG
Stem-loop sequence ACUUUCAUGACAUAUAUAUAUAUAUAUAUAUAUAUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUUGUGUGUGUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003519414.3
ncRNA:20   UGUGUGUGUGUUGUGUGUGU   1
  ||||=*||||||||||||||
targets:463   ACACGAACACAACACACACA   482

2.0 PREDICTED: Glycine max uncharacterized LOC100777384 (LOC100777384), mRNA uncharacterized LOC100777384(LOC100777384) coding protein psRNATarget
AK244800.1
ncRNA:20   UGUGUGUGUGUUGUGUGUGU   1
  ||||=*||||||||||||||
targets:43   ACACGAACACAACACACACA   62

2.0 Glycine max cDNA, clone: GMFL01-14-E24 NA coding protein psRNATarget
XM_003553771.3
ncRNA:20   UGUGUGUGUGUUGUGUGUGU   1
  ||||=*||||||||||||||
targets:143   ACACGAACACAACACACACA   162

2.0 PREDICTED: Glycine max F-box/LRR-repeat protein 4-like (LOC100819643), mRNA F-box/LRR-repeat protein 4-like(LOC100819643) coding protein psRNATarget
XM_003552613.3
ncRNA:20   UGUGUGUGUGUUGUGUGUGU   1
  |||||*|||||||||||||*
targets:207   ACACAAACACAACACACACU   226

2.0 PREDICTED: Glycine max ACT domain-containing protein ACR4-like (LOC100816426), mRNA ACT domain-containing protein ACR4-like(LOC100816426) coding protein psRNATarget
XM_006577823.2
ncRNA:20   UGUGUGUGUGUUGUGUGUGU   1
  ||||||||||||||||||*=
targets:3258   ACACACACACAACACACAAG   3277

2.5 PREDICTED: Glycine max alanine--tRNA ligase, chloroplastic/mitochondrial-like (LOC100788288), mRNA alanine--tRNA ligase, chloroplastic/mitochondrial-like(LOC100788288) coding protein psRNATarget
XM_003554493.3
ncRNA:20   UGUGUGUGUGUUGUGUGUGU   1
  **|||||||||||||=||||
targets:94   UAACACACACAACACGCACA   113

2.5 PREDICTED: Glycine max dnaJ protein ERDJ3B (LOC100807885), mRNA dnaJ protein ERDJ3B(LOC100807885) coding protein psRNATarget
AK285794.1
ncRNA:20   UGUGUGUGUGUUGUGUGUGU   1
  **|||||||||||||=||||
targets:23   UAACACACACAACACGCACA   42

2.5 Glycine max cDNA, clone: GMFL01-16-H05 NA coding protein psRNATarget
XM_014763038.1
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:3154   ACACACACACACACACACACA   3174

3.0 PREDICTED: Glycine max serine-arginine protein 55-like (LOC102663994), transcript variant X2, mRNA serine-arginine protein 55-like(LOC102663994) coding protein psRNATarget
XM_014763039.1
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:3154   ACACACACACACACACACACA   3174

3.0 PREDICTED: Glycine max serine-arginine protein 55-like (LOC102663994), transcript variant X3, mRNA serine-arginine protein 55-like(LOC102663994) coding protein psRNATarget
XM_006599576.2
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:246   ACACACACACACACACACACA   266

3.0 PREDICTED: Glycine max uncharacterized LOC100793127 (LOC100793127), mRNA uncharacterized LOC100793127(LOC100793127) coding protein psRNATarget
XM_003544747.3
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:212   ACACACACACACACACACACA   232

3.0 PREDICTED: Glycine max probable pectin methyltransferase QUA2 (LOC100787635), transcript variant X1, mRNA probable pectin methyltransferase QUA2(LOC100787635) coding protein psRNATarget
XM_003546458.3
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:196   ACACACACACACACACACACA   216

3.0 PREDICTED: Glycine max uncharacterized LOC100808150 (LOC100808150), mRNA uncharacterized LOC100808150(LOC100808150) coding protein psRNATarget
XM_003538817.3
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:134   ACACACACACACACACACACA   154

3.0 PREDICTED: Glycine max probable methyltransferase PMT27 (LOC100797433), mRNA probable methyltransferase PMT27(LOC100797433) coding protein psRNATarget
AK285934.1
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:2417   ACACACACACACACACACACA   2437

3.0 Glycine max cDNA, clone: GMFL01-18-N14 NA coding protein psRNATarget
XM_006593683.2
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:106   ACACACACACACACACACACA   126

3.0 PREDICTED: Glycine max ABC transporter G family member 11-like (LOC100789571), transcript variant X1, mRNA ABC transporter G family member 11-like(LOC100789571) coding protein psRNATarget
XM_003543878.3
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:106   ACACACACACACACACACACA   126

3.0 PREDICTED: Glycine max ABC transporter G family member 11-like (LOC100789571), transcript variant X2, mRNA ABC transporter G family member 11-like(LOC100789571) coding protein psRNATarget
XM_003542123.3
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:69   ACACACACACACACACACACA   89

3.0 PREDICTED: Glycine max calmodulin-binding protein 60 B (LOC100790087), mRNA calmodulin-binding protein 60 B(LOC100790087) coding protein psRNATarget
XM_003542123.3
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:91   ACACACACACACACACACACA   111

3.0 PREDICTED: Glycine max calmodulin-binding protein 60 B (LOC100790087), mRNA calmodulin-binding protein 60 B(LOC100790087) coding protein psRNATarget
XM_006592225.2
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:259   ACACACACACACACACACACA   279

3.0 PREDICTED: Glycine max protein UPSTREAM OF FLC-like (LOC100783687), transcript variant X1, mRNA protein UPSTREAM OF FLC-like(LOC100783687) coding protein psRNATarget
XM_006592226.2
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:259   ACACACACACACACACACACA   279

3.0 PREDICTED: Glycine max protein UPSTREAM OF FLC-like (LOC100783687), transcript variant X2, mRNA protein UPSTREAM OF FLC-like(LOC100783687) coding protein psRNATarget
XM_003518309.3
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:222   ACACACACACACACACACACA   242

3.0 PREDICTED: Glycine max probable acyl-activating enzyme 6 (LOC100789991), mRNA probable acyl-activating enzyme 6(LOC100789991) coding protein psRNATarget
XM_003550470.3
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:471   ACACACACACACACACACACA   491

3.0 PREDICTED: Glycine max S-adenosylmethionine decarboxylase proenzyme 4-like (LOC100784853), mRNA S-adenosylmethionine decarboxylase proenzyme 4-like(LOC100784853) coding protein psRNATarget
XM_014768112.1
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:260   ACACACACACACACACACACA   280

3.0 PREDICTED: Glycine max guanylate kinase 2-like (LOC100812658), transcript variant X1, mRNA guanylate kinase 2-like(LOC100812658) coding protein psRNATarget
XM_003529337.3
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:133   ACACACACACACACACACACA   153

3.0 PREDICTED: Glycine max polyadenylate-binding protein RBP47-like (LOC100814564), mRNA polyadenylate-binding protein RBP47-like(LOC100814564) coding protein psRNATarget
XM_003542436.3
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:259   ACACACACACACACACACACA   279

3.0 PREDICTED: Glycine max E3 ubiquitin-protein ligase SGR9, amyloplastic (LOC100818800), mRNA E3 ubiquitin-protein ligase SGR9, amyloplastic(LOC100818800) coding protein psRNATarget
DQ340249.1
ncRNA:20   UGUGUGUGUGUUGUGU-GUGU   1
  ||||||||||||||||-||||
targets:215   ACACACACACAACACAACACA   235

3.0 Glycine max cytochrome P450 monooxygenase CYP51G1 (CYP51G1) mRNA, partial cds NA coding protein psRNATarget
XM_014772396.1
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:71   ACACACACACACACACACACA   91

3.0 PREDICTED: Glycine max B3 domain-containing transcription factor LEC2-like (LOC106797573), mRNA B3 domain-containing transcription factor LEC2-like(LOC106797573) coding protein psRNATarget
XM_003548691.3
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:293   ACACACACACACACACACACA   313

3.0 PREDICTED: Glycine max uncharacterized LOC100791380 (LOC100791380), mRNA uncharacterized LOC100791380(LOC100791380) coding protein psRNATarget
XM_003544880.3
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:321   ACACACACACACACACACACA   341

3.0 PREDICTED: Glycine max EPIDERMAL PATTERNING FACTOR-like protein 6 (LOC100815621), transcript variant X1, mRNA EPIDERMAL PATTERNING FACTOR-like protein 6(LOC100815621) coding protein psRNATarget
AK286085.1
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:282   ACACACACACACACACACACA   302

3.0 Glycine max cDNA, clone: GMFL01-21-J15 NA coding protein psRNATarget
BT097603.1
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:277   ACACACACACACACACACACA   297

3.0 Soybean clone JCVI-FLGm-22E2 unknown mRNA NA coding protein psRNATarget
XM_014776791.1
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:231   ACACACACACACACACACACA   251

3.0 PREDICTED: Glycine max uncharacterized LOC106798975 (LOC106798975), mRNA uncharacterized LOC106798975(LOC106798975) coding protein psRNATarget
XM_014776791.1
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:253   ACACACACACACACACACACA   273

3.0 PREDICTED: Glycine max uncharacterized LOC106798975 (LOC106798975), mRNA uncharacterized LOC106798975(LOC106798975) coding protein psRNATarget
XM_014776791.1
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:275   ACACACACACACACACACACA   295

3.0 PREDICTED: Glycine max uncharacterized LOC106798975 (LOC106798975), mRNA uncharacterized LOC106798975(LOC106798975) coding protein psRNATarget
XM_014776791.1
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:297   ACACACACACACACACACACA   317

3.0 PREDICTED: Glycine max uncharacterized LOC106798975 (LOC106798975), mRNA uncharacterized LOC106798975(LOC106798975) coding protein psRNATarget
XM_003549593.3
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:472   ACACACACACACACACACACA   492

3.0 PREDICTED: Glycine max uncharacterized LOC100794197 (LOC100794197), mRNA uncharacterized LOC100794197(LOC100794197) coding protein psRNATarget
BT089302.1
ncRNA:20   UGUGUGUGUGU-UGUGUGUGU   1
  |||||||||||-|||||||||
targets:51   ACACACACACACACACACACA   71

3.0 Soybean clone JCVI-FLGm-14E9 unknown mRNA NA coding protein psRNATarget
XM_003542655.3
ncRNA:20   UGUGUGUGUGUUGUGU-GUGU   1
  *|||||||||||||||-||||
targets:129   UCACACACACAACACAUCACA   149

3.0 PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 1-like (LOC100800475), transcript variant X1, mRNA mediator of RNA polymerase II transcription subunit 1-like(LOC100800475) coding protein psRNATarget
XM_006593516.2
ncRNA:20   UGUGUGUGUGUUGUGU-GUGU   1
  *|||||||||||||||-||||
targets:131   UCACACACACAACACAUCACA   151

3.0 PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 1-like (LOC100800475), transcript variant X2, mRNA mediator of RNA polymerase II transcription subunit 1-like(LOC100800475) coding protein psRNATarget
XM_003535761.3
ncRNA:20   UGUGUGUGUGUUGUGUGUGU   1
  ||=|=|*|||||||||||||
targets:75   ACGCGCCCACAACACACACA   94

3.0 PREDICTED: Glycine max protein YLS9-like (LOC100788592), mRNA protein YLS9-like(LOC100788592) coding protein psRNATarget
XM_006601134.2
ncRNA:20   UGUGU-GUGUGUUGUGUGUGU   1
  |||||-||||||||||||||*
targets:17   ACACAACACACAACACACACC   37

3.0 PREDICTED: Glycine max uncharacterized LOC100795601 (LOC100795601), transcript variant X1, mRNA uncharacterized LOC100795601(LOC100795601) coding protein psRNATarget
XM_006601135.2
ncRNA:20   UGUGU-GUGUGUUGUGUGUGU   1
  |||||-||||||||||||||*
targets:18   ACACAACACACAACACACACC   38

3.0 PREDICTED: Glycine max uncharacterized LOC100795601 (LOC100795601), transcript variant X2, mRNA uncharacterized LOC100795601(LOC100795601) coding protein psRNATarget
XM_003522040.3
ncRNA:20   UGUGUGUGUGUUGUGUGUGU   1
  |||==*||||||||||||||
targets:315   ACAUGGACACAACACACACA   334

3.0 PREDICTED: Glycine max mannan endo-1,4-beta-mannosidase 6-like (LOC100801139), transcript variant X3, mRNA mannan endo-1,4-beta-mannosidase 6-like(LOC100801139) coding protein psRNATarget
XM_006576219.2
ncRNA:20   UGUGUGUGUGUUGUGUGUGU   1
  |||==*||||||||||||||
targets:316   ACAUGGACACAACACACACA   335

3.0 PREDICTED: Glycine max mannan endo-1,4-beta-mannosidase 6-like (LOC100801139), transcript variant X4, mRNA mannan endo-1,4-beta-mannosidase 6-like(LOC100801139) coding protein psRNATarget
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