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BaseInfo

ncRNA ID novel_gma_miR2993
Species Glycine max
Class miRNA
Genome position Chr11:9580285-9580368 [+]
Reference genome Glycine_max_v2.0
Source SRR1451666
Length 19
Mature sequence(if miRNA) 66 - AGAAGUGAUCUUUGCAUGA - 84
Stem-loop(if miRNA) --U  UG      --    ---U   CUUUUACUUAGUUAUACA
   UG  AGGAUU  UUCU    UUC                  G
   ||  ||||||  ||||    |||                  U
   AC  UUCUAG  AAGA    UAU                  A
AGU  GU      UG    CGAA   AAACAGGUGACAAGGUUA
Stem-loop sequence UUGUGAGGAUUUUCUUUUCCUUUUACUUAGUUAUACAGUAAUUGGAACAGUGGACAAAUAUAAGCAGAAGUGAUCUUUGCAUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003556027.3
ncRNA:19   AGUACGUUUCUAGUGAAGA   1
  |*|*|||||||||||||||
targets:1813   UAAAGCAAAGAUCACUUCU   1831

2.0 PREDICTED: Glycine max DEAD-box ATP-dependent RNA helicase 7-like (LOC100820207), mRNA DEAD-box ATP-dependent RNA helicase 7-like(LOC100820207) coding protein psRNATarget
XM_003536450.2
ncRNA:19   AGUACGUUUCUAGUGAAGA   1
  |*|*|||||||||||||||
targets:1831   UAAAGCAAAGAUCACUUCU   1849

2.0 PREDICTED: Glycine max DEAD-box ATP-dependent RNA helicase 7-like (LOC100805921), mRNA DEAD-box ATP-dependent RNA helicase 7-like(LOC100805921) coding protein psRNATarget
XM_006604078.2
ncRNA:19   AGUACGUUUCUAGUGAAGA   1
  ||||*|||||||||*||||
targets:1065   UCAUUCAAAGAUCAAUUCU   1083

2.5 PREDICTED: Glycine max putative nuclease HARBI1 (LOC102660080), mRNA putative nuclease HARBI1(LOC102660080) coding protein psRNATarget