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BaseInfo

ncRNA ID	novel_gma_miR2963
Species	Glycine max
Class	miRNA
Genome position	Chr14:47701057-47701130 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451665
Length	20
Mature sequence(if miRNA)	1 - AAAAGCUUCUUCUGUUGACU - 20
Stem-loop(if miRNA)	--   -  UAU        G    ----    UUUU   CA   UCA CA   AGAAGCUU UGCG    CAAA    ACA  U   ||| ||   |||||||| ||||    ||||    |||   AGU GU   UCUUCGAA ACGU    GUUU    UGU  G UC   U  -CU        A    UAAG    --UU   AC
Stem-loop sequence	UCACAUAUAGAAGCUUGUGCGCAAAUUUUACACAUGCAUGUUUUUUGGAAUUGCAAAAGCUUCUUCUGUUGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014764194.1	ncRNA:20   UCAGUUGUCUUCUUCGAAAA   1   =|||||=|||||||*||||| targets:443   GGUCAAUAGAAGAAUCUUUU   462 Target Full Sequence	2.5	PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X9, mRNA	COX assembly mitochondrial protein 2 homolog(LOC100789163)	coding protein	psRNATarget
XM_006591237.2	ncRNA:20   UCAGUUGUCUUCUUCGAAAA   1   =|||||=|||||||*||||| targets:455   GGUCAAUAGAAGAAUCUUUU   474 Target Full Sequence	2.5	PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X8, mRNA	COX assembly mitochondrial protein 2 homolog(LOC100789163)	coding protein	psRNATarget
XM_006591232.2	ncRNA:20   UCAGUUGUCUUCUUCGAAAA   1   =|||||=|||||||*||||| targets:480   GGUCAAUAGAAGAAUCUUUU   499 Target Full Sequence	2.5	PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X3, mRNA	COX assembly mitochondrial protein 2 homolog(LOC100789163)	coding protein	psRNATarget
XM_006591234.2	ncRNA:20   UCAGUUGUCUUCUUCGAAAA   1   =|||||=|||||||*||||| targets:642   GGUCAAUAGAAGAAUCUUUU   661 Target Full Sequence	2.5	PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X4, mRNA	COX assembly mitochondrial protein 2 homolog(LOC100789163)	coding protein	psRNATarget
XM_006591233.2	ncRNA:20   UCAGUUGUCUUCUUCGAAAA   1   =|||||=|||||||*||||| targets:647   GGUCAAUAGAAGAAUCUUUU   666 Target Full Sequence	2.5	PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X2, mRNA	COX assembly mitochondrial protein 2 homolog(LOC100789163)	coding protein	psRNATarget
XM_014764193.1	ncRNA:20   UCAGUUGUCUUCUUCGAAAA   1   =|||||=|||||||*||||| targets:692   GGUCAAUAGAAGAAUCUUUU   711 Target Full Sequence	2.5	PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X7, mRNA	COX assembly mitochondrial protein 2 homolog(LOC100789163)	coding protein	psRNATarget
XM_006591236.2	ncRNA:20   UCAGUUGUCUUCUUCGAAAA   1   =|||||=|||||||*||||| targets:703   GGUCAAUAGAAGAAUCUUUU   722 Target Full Sequence	2.5	PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X5, mRNA	COX assembly mitochondrial protein 2 homolog(LOC100789163)	coding protein	psRNATarget
XM_003538317.3	ncRNA:20   UCAGUUGUCUUCUUCGAAAA   1   =|||||=|||||||*||||| targets:724   GGUCAAUAGAAGAAUCUUUU   743 Target Full Sequence	2.5	PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X1, mRNA	COX assembly mitochondrial protein 2 homolog(LOC100789163)	coding protein	psRNATarget
XM_006591235.2	ncRNA:20   UCAGUUGUCUUCUUCGAAAA   1   =|||||=|||||||*||||| targets:736   GGUCAAUAGAAGAAUCUUUU   755 Target Full Sequence	2.5	PREDICTED: Glycine max COX assembly mitochondrial protein 2 homolog (LOC100789163), transcript variant X6, mRNA	COX assembly mitochondrial protein 2 homolog(LOC100789163)	coding protein	psRNATarget
NM_001255557.1	ncRNA:20   UCAGUUGUCUUCUUCGAAAA   1   ||*|||||||||||||||*| targets:1183   AGGCAACAGAAGAAGCUUCU   1202 Target Full Sequence	2.5	Glycine max uncharacterized LOC100786070 (LOC100786070), mRNA	uncharacterized LOC100786070(LOC100786070)	coding protein	psRNATarget
BT096493.1	ncRNA:20   UCAGUUGUCUUCUUCGAAAA   1   ||*|||||||||||||||*| targets:1183   AGGCAACAGAAGAAGCUUCU   1202 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-20F14 unknown mRNA	NA	coding protein	psRNATarget
XM_003551833.3	ncRNA:20   UCAGUUGUCUUCUUCGAAAA   1   ||*|||||||||||||||*| targets:1193   AGGCAACAGAAGAAGCUUCU   1212 Target Full Sequence	2.5	PREDICTED: Glycine max AUGMIN subunit 4-like (LOC100790889), transcript variant X1, mRNA	AUGMIN subunit 4-like(LOC100790889)	coding protein	psRNATarget
XM_003553180.3	ncRNA:20   UCAGUUGUCUUCUUCGAAAA   1   *||||*|||||||*|||||| targets:990   UGUCAUCAGAAGAUGCUUUU   1009 Target Full Sequence	2.5	PREDICTED: Glycine max DEAD-box ATP-dependent RNA helicase 22-like (LOC100789323), mRNA	DEAD-box ATP-dependent RNA helicase 22-like(LOC100789323)	coding protein	psRNATarget
XM_003530613.3	ncRNA:20   UCAGUUGUCUUCUUCGAAAA   1   *||||*|||||||*|||||| targets:1014   UGUCAUCAGAAGAUGCUUUU   1033 Target Full Sequence	2.5	PREDICTED: Glycine max DEAD-box ATP-dependent RNA helicase 22-like (LOC100780518), transcript variant X4, mRNA	DEAD-box ATP-dependent RNA helicase 22-like(LOC100780518)	coding protein	psRNATarget
NM_001251183.1	ncRNA:20   UCAGUUGUCUUCUUCGAAAA   1   **||*=|||||||||||||| targets:812   CAUCUGCAGAAGAAGCUUUU   831 Target Full Sequence	3.0	Glycine max stress-induced receptor-like kinase (LOC100305367), mRNA	stress-induced receptor-like kinase(LOC100305367)	coding protein	psRNATarget
EU888327.1	ncRNA:20   UCAGUUGUCUUCUUCGAAAA   1   **||*=|||||||||||||| targets:812   CAUCUGCAGAAGAAGCUUUU   831 Target Full Sequence	3.0	Glycine max clone 8070618 stress-induced receptor-like kinase mRNA, complete cds	NA	coding protein	psRNATarget