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BaseInfo

ncRNA ID novel_gma_miR2957
Species Glycine max
Class miRNA
Genome position Chr11:32898524-32898608 [+]
Reference genome Glycine_max_v2.0
Source SRR1451664
Length 22
Mature sequence(if miRNA) 64 - CUGAAGGACCGAUGUAGAAUAC - 85
Stem-loop(if miRNA) --           A    G            UCA     UGC
  AUUCUACAUCG UCCU CAGUUGUGACCG   UAGAA   U
  ||||||||||| |||| ||||||||||||   |||||   A
  UAAGAUGUAGC AGGA GUCAACACUGGC   AUCUU   A
CA           C    A            UAC     UUU
Stem-loop sequence AUUCUACAUCGAUCCUGCAGUUGUGACCGUCAUAGAAUGCUAAUUUUUCUACAUCGGUCACAACUGAAGGACCGAUGUAGAAUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006583907.2
ncRNA:22   CAUAAGAUGUAGCCAGGAAGUC   1
  |**|||||||||||||||||*|
targets:154   GCUUUCUACAUCGGUCCUUCUG   175

1.5 PREDICTED: Glycine max uncharacterized LOC102668119 (LOC102668119), transcript variant X1, mRNA uncharacterized LOC102668119(LOC102668119) coding protein psRNATarget
XM_003516565.3
ncRNA:22   CAUAAGAUGUAGCCAGGAAGUC   1
  *|*||||*|||||||=||||||
targets:60   UUUUUCUCCAUCGGUUCUUCAG   81

2.5 PREDICTED: Glycine max aspartic proteinase nepenthesin-1-like (LOC100804268), mRNA aspartic proteinase nepenthesin-1-like(LOC100804268) coding protein psRNATarget