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BaseInfo

ncRNA ID ath-miR8171
Species Arabidopsis thaliana
Class miRNA
Genome position chr2:16890446-16890567 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 21 - AUAGGUGGGCCAGUGGUAGGA - 41
Stem-loop(if miRNA)     AAUCA  AAA       U     --G  C   G  A  AA     U      GA    GAAAU
GCGG     UG   CCACUUA AGGUG   GC AGU GU GG  GGAUU CGGGCU  GGGU     U
||||     ||   ||||||| |||||   || ||| || ||  ||||| ||||||  ||||     C
CGCC     AC   GGUGAAU UCCAC   CG UCG CA CC  CCUAA GCUUGG  CCUA     C
    -----  --C       -     AAA  -   G  -  --     -      GC    AUAAC
Stem-loop sequence GCGGAAUCAUGAAACCACUUAUAGGUGGGCCAGUGGUAGGAAGGAUUUCGGGCUGAGGGUGAAAUUCCCAAUAAUCCCGGGUUCGAAUCCCCACGGCUGCAAACACCUUAAGUGGCCACCGC

Reference

1 PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots";
Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA;
BMC Genomics. 14:701(2013).