ncRNA ID | ath-miR8171 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr2:16890446-16890567 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 21 - AUAGGUGGGCCAGUGGUAGGA - 41 |
Stem-loop(if miRNA) |
    AAUCA  AAA       U     --G  C   G  A  AA     U      GA    GAAAU GCGG     UG   CCACUUA AGGUG   GC AGU GU GG  GGAUU CGGGCU  GGGU     U ||||     ||   ||||||| |||||   || ||| || ||  ||||| ||||||  ||||     C CGCC     AC   GGUGAAU UCCAC   CG UCG CA CC  CCUAA GCUUGG  CCUA     C     -----  --C       -     AAA  -   G  -  --     -      GC    AUAAC |
Stem-loop sequence | GCGGAAUCAUGAAACCACUUAUAGGUGGGCCAGUGGUAGGAAGGAUUUCGGGCUGAGGGUGAAAUUCCCAAUAAUCCCGGGUUCGAAUCCCCACGGCUGCAAACACCUUAAGUGGCCACCGC |
1 | PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots"; Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA; BMC Genomics. 14:701(2013). |