Search result

BaseInfo

ncRNA ID	novel_gma_miR2929
Species	Glycine max
Class	miRNA
Genome position	Chr19:35877679-35877753 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451664
Length	24
Mature sequence(if miRNA)	52 - CAGAUCAAGUUGAUCCGUAAGACG - 75
Stem-loop(if miRNA)	--                      C      A   CA   CAGAUCAAGUUGAUCCGUAAGA GCAUAC GAU  A   |||||||||||||||||||||| |||||| |||  C   GUUUAGUUCAACUAGGCAUUCU CGUAUG CUA  U AU                      U      C   CU
Stem-loop sequence	CAGAUCAAGUUGAUCCGUAAGACGCAUACAGAUCAACUUCAUCCGUAUGCUUCUUACGGAUCAACUUGAUUUGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014768353.1	ncRNA:24   GCA------GAAUGCCUAGUUGAACUAGAC   1   |||------=|||||||||||||||||||| targets:501   CGUAAAAUCUUUACGGAUCAACUUGAUCUG   530 Target Full Sequence	0.0	PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA	CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524)	coding protein	psRNATarget
XM_006600975.2	ncRNA:24   GCA------GAAUGCCUAGUUGAACUAGAC   1   |||------|||||||||||||||||||*| targets:1241   CGUAAAAGCCUUACGGAUCAACUUGAUCCG   1270 Target Full Sequence	1.5	PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA	basic leucine zipper 9-like(LOC100776831)	coding protein	psRNATarget
XM_014770919.1	ncRNA:24   GCAGAAUGCCUAGUUGAACUAGAC   1   =*||||==|||||||||||||||| targets:2151   UUUCUUGUGGAUCAACUUGAUCUG   2174 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100800748 (LOC100800748), transcript variant X3, mRNA	uncharacterized LOC100800748(LOC100800748)	coding protein	psRNATarget
XM_006602969.2	ncRNA:24   GCAGAAUGCCUAGUUGAACUAGAC   1   =*||||==|||||||||||||||| targets:2150   UUUCUUGUGGAUCAACUUGAUCUG   2173 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100800748 (LOC100800748), transcript variant X2, mRNA	uncharacterized LOC100800748(LOC100800748)	coding protein	psRNATarget
XM_014770918.1	ncRNA:24   GCAGAAUGCCUAGUUGAACUAGAC   1   =*||||==|||||||||||||||| targets:2150   UUUCUUGUGGAUCAACUUGAUCUG   2173 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100800748 (LOC100800748), transcript variant X1, mRNA	uncharacterized LOC100800748(LOC100800748)	coding protein	psRNATarget
XM_014768353.1	ncRNA:24   GCAGAAUGCCUAGUUGAACUAGAC   1   |**||||=||||||||||||||*| targets:1047   CAACUUAUGGAUCAACUUGAUCCG   1070 Target Full Sequence	2.5	PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA	CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524)	coding protein	psRNATarget
XM_014768353.1	ncRNA:24   GCAGAAUGCCUAGUUGAACUAGAC   1   *|**|||||||||||*|||||||* targets:590   AGAAUUACGGAUCAAGUUGAUCUA   613 Target Full Sequence	2.5	PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA	CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524)	coding protein	psRNATarget
XM_003547498.3	ncRNA:24   GCAGAAUGCCUAGUUGAACUAGAC   1   |**||||=||||||||||||||*| targets:452   CAACUUAUGGAUCAACUUGAUCCG   475 Target Full Sequence	2.5	PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA	CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524)	coding protein	psRNATarget
XM_006574797.2	ncRNA:24   GCAGAAUGCCUAGUUGAACUAGAC   1   =*||||==|*|||||||||||||| targets:2219   UUUCUUGUGAAUCAACUUGAUCUG   2242 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100791584 (LOC100791584), transcript variant X1, mRNA	uncharacterized LOC100791584(LOC100791584)	coding protein	psRNATarget