Search result

BaseInfo

ncRNA ID	novel_gma_miR2916
Species	Glycine max
Class	miRNA
Genome position	Chr14:21905474-21905624 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451664
Length	21
Mature sequence(if miRNA)	131 - AUUUCUAAAACUGUUUUAUCC - 151
Stem-loop(if miRNA)	--A          U     AUCC      CAUC       A              -----C    UUCUGAAGAACCA    UUUCUAAAAC GUUUU    AAAAAC    UUAGAGA UAGACUUUCUAAGA      GGUU             U    |||||||||| |||||    ||||||    ||||||| ||||||||||||||      ||||             U    AAAGAUUUUG CAAGA    UUUUUG    AGUUUUU AUCUGAAAGAUUCU      UUUC             U GUG          U     -AAU      ACAU       G              ACUAAC    GUAUGAAAAAAAU
Stem-loop sequence	AUUUCUAAAACUGUUUUAUCCAAAAACCAUCUUAGAGAAUAGACUUUCUAAGACGGUUUUCUGAAGAACCAUUUUAAAAAAAGUAUGCUUUCAAUCAUCUUAGAAAGUCUAGUUUUUGAUACAGUUUUUUAAAGAACUGUUUUAGAAAGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK243820.1	ncRNA:21   CCUAUUUUGUCAAAAUCUUUA   1   **|||||||*||||||||||| targets:1186   ACAUAAAACUGUUUUAGAAAU   1206 Target Full Sequence	1.5	Glycine max cDNA, clone: GMFL01-01-F13	NA	coding protein	psRNATarget
XM_014767559.1	ncRNA:21   CCUAUUUUGUCAAAAUCUUUA   1   |*|||||*=|||||||||||| targets:1586   GAAUAAAUUAGUUUUAGAAAU   1606 Target Full Sequence	2.5	PREDICTED: Glycine max cell division control protein 48 homolog C-like (LOC100800513), partial mRNA	cell division control protein 48 homolog C-like(LOC100800513)	coding protein	psRNATarget
XM_003556070.3	ncRNA:21   CCUAUUUUGUCAAAAUCUUUA   1   *||*||||||||*|||||||| targets:113   AGAAAAAACAGUCUUAGAAAU   133 Target Full Sequence	2.5	PREDICTED: Glycine max sec-independent protein translocase protein TATB, chloroplastic-like (LOC100799045), mRNA	sec-independent protein translocase protein TATB, chloroplastic-like(LOC100799045)	coding protein	psRNATarget